Variant report

Variant	rs10203788
Chromosome Location	chr2:127270559-127270560
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10179912	1.00[JPT][hapmap];0.88[YRI][hapmap]
rs10182007	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10194561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13382980	0.90[AFR][1000 genomes]
rs13386710	0.90[AFR][1000 genomes]
rs13413216	0.88[ASN][1000 genomes]
rs13415629	0.85[AFR][1000 genomes]
rs13419397	0.90[AFR][1000 genomes]
rs13425593	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13425595	0.85[AFR][1000 genomes]
rs1440050	0.82[ASN][1000 genomes]
rs4577234	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56896312	0.90[AFR][1000 genomes]
rs6431080	0.90[AFR][1000 genomes]
rs6431081	0.90[AFR][1000 genomes]
rs6431097	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6727953	0.88[ASN][1000 genomes]
rs6753696	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7590145	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7591893	0.82[ASN][1000 genomes]
rs7598155	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7598599	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7599552	0.90[AFR][1000 genomes]
rs7606965	0.94[ASN][1000 genomes]
rs958916	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs961447	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001995	chr2:126506739-127314488	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1002265	chr2:127029745-127733458	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv535919	chr2:127029745-127733458	Strong transcription Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:127265400-127270600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr2:127268600-127270800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:127268600-127270800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr2:127268600-127270800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr2:127270000-127271200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr2:127270200-127270600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr2:127270200-127271200	Enhancers	Fetal Muscle Leg	muscle
8	chr2:127270200-127271400	Enhancers	Fetal Brain Male	brain

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