Variant report

Variant	rs10258475
Chromosome Location	chr7:108829906-108829907
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10227685	0.82[EUR][1000 genomes]
rs1023506	0.85[AMR][1000 genomes]
rs10235107	0.82[EUR][1000 genomes]
rs10246584	0.82[EUR][1000 genomes]
rs10247108	0.82[EUR][1000 genomes]
rs10260100	0.82[EUR][1000 genomes]
rs10953602	0.85[AMR][1000 genomes]
rs12705552	0.88[AMR][1000 genomes]
rs12705553	0.87[AMR][1000 genomes]
rs12705576	0.81[AMR][1000 genomes]
rs13308920	0.81[AMR][1000 genomes]
rs1525031	0.83[EUR][1000 genomes]
rs1525032	0.83[EUR][1000 genomes]
rs1858893	0.85[AMR][1000 genomes]
rs1858894	0.87[AMR][1000 genomes]
rs2012783	0.83[AMR][1000 genomes]
rs2015731	0.89[AMR][1000 genomes]
rs2015789	0.89[AMR][1000 genomes]
rs2078861	0.80[AMR][1000 genomes]
rs2106442	0.87[AMR][1000 genomes]
rs2106443	0.87[AMR][1000 genomes]
rs2106445	0.81[AMR][1000 genomes]
rs2188433	0.89[AMR][1000 genomes]
rs2204403	0.81[EUR][1000 genomes]
rs2204405	0.81[EUR][1000 genomes]
rs2214061	0.89[AMR][1000 genomes]
rs2396074	0.87[AMR][1000 genomes]
rs2396075	0.87[AMR][1000 genomes]
rs2396076	0.89[AMR][1000 genomes]
rs28887322	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4727722	0.89[AMR][1000 genomes]
rs4730365	0.89[AMR][1000 genomes]
rs6962205	0.82[EUR][1000 genomes]
rs6962346	0.82[EUR][1000 genomes]
rs6962357	0.82[EUR][1000 genomes]
rs6980269	0.82[EUR][1000 genomes]
rs756842	0.87[AMR][1000 genomes]
rs756843	0.87[AMR][1000 genomes]
rs766705	0.87[AMR][1000 genomes]
rs766706	0.87[AMR][1000 genomes]
rs7779745	0.89[AMR][1000 genomes]
rs7786274	0.86[AMR][1000 genomes]
rs7800005	0.87[AMR][1000 genomes]
rs7801136	0.85[AMR][1000 genomes]
rs7809205	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831091	chr7:108756218-108923644	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1018586	chr7:108759240-109034145	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv429794	chr7:108763098-109003574	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1016803	chr7:108786402-109013227	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv539054	chr7:108786402-109013227	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv831094	chr7:108806619-108981593	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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