Variant report

Variant	rs2015789
Chromosome Location	chr7:108887007-108887008
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10227685	0.83[EUR][1000 genomes]
rs10234165	0.97[EUR][1000 genomes]
rs1023506	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10235107	0.83[EUR][1000 genomes]
rs10246584	0.83[EUR][1000 genomes]
rs10247108	0.83[EUR][1000 genomes]
rs10258475	0.90[YRI][hapmap];0.89[AMR][1000 genomes]
rs10260100	0.83[EUR][1000 genomes]
rs10953602	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11978844	1.00[CHD][hapmap]
rs11983931	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12705552	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12705553	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12705576	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13308920	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1525031	0.83[EUR][1000 genomes]
rs1525032	0.83[EUR][1000 genomes]
rs1858893	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1858894	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1987422	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2012783	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2015731	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2078861	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2106442	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2106443	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2106445	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2188433	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2188440	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2204403	0.82[EUR][1000 genomes]
rs2204404	0.80[EUR][1000 genomes]
rs2204405	0.82[EUR][1000 genomes]
rs2214061	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2396074	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2396075	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2396076	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2396095	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28887322	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4727722	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4730365	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6962205	0.83[EUR][1000 genomes]
rs6962346	0.83[EUR][1000 genomes]
rs6962357	0.83[EUR][1000 genomes]
rs6980269	0.83[EUR][1000 genomes]
rs756842	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs756843	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs766705	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs766706	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7779745	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7786274	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7800005	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7800571	0.90[EUR][1000 genomes]
rs7801136	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7809205	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs848835	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831091	chr7:108756218-108923644	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1018586	chr7:108759240-109034145	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv429794	chr7:108763098-109003574	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1016803	chr7:108786402-109013227	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv539054	chr7:108786402-109013227	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv831094	chr7:108806619-108981593	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv1849605	chr7:108882191-108913019	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108886200-108887400	Enhancers	NHEK	skin
2	chr7:108886400-108887200	Enhancers	Hela-S3	cervix
3	chr7:108886400-108887200	Enhancers	NH-A	brain
4	chr7:108886400-108887400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:108886400-108887400	Enhancers	HMEC	breast
6	chr7:108886400-108887800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:108886400-108888200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr7:108886800-108887400	Enhancers	Gastric	stomach
9	chr7:108887000-108887200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:108887000-108887400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr7:108887000-108887400	Enhancers	Fetal Heart	heart

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