Variant report

Variant	rs1025894
Chromosome Location	chr8:114697562-114697563
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10102855	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10105596	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs10505207	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12155930	0.89[ASN][1000 genomes]
rs12335168	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1452755	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1470302	0.89[ASN][1000 genomes]
rs16884999	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2167727	0.88[ASN][1000 genomes]
rs28450774	0.85[ASN][1000 genomes]
rs28610994	0.93[ASN][1000 genomes]
rs4242557	0.94[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap]
rs4486239	0.83[ASN][1000 genomes]
rs4493935	0.89[ASN][1000 genomes]
rs4876313	0.89[ASN][1000 genomes]
rs4876530	0.85[ASN][1000 genomes]
rs59155042	0.93[ASN][1000 genomes]
rs6983855	0.93[ASN][1000 genomes]
rs7017608	0.93[ASN][1000 genomes]
rs7018445	0.83[ASN][1000 genomes]
rs734621	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7816794	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7820153	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs7825903	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7831447	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7842112	0.89[ASN][1000 genomes]
rs7844345	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817379	chr8:114338391-115011632	Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv818650	chr8:114574863-115477600	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2758168	chr8:114575703-115321957	Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv2759636	chr8:114575703-115321957	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv891335	chr8:114589007-114725064	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv891336	chr8:114667112-114753522	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1851155	chr8:114673166-114773729	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1025894	RAD21	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:114696000-114697800	Active TSS	Brain Anterior Caudate	brain
2	chr8:114696800-114698200	Enhancers	Primary B cells from peripheral blood	blood
3	chr8:114697000-114698200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr8:114697200-114698000	Flanking Active TSS	GM12878-XiMat	blood
5	chr8:114697200-114698000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr8:114697400-114698600	Enhancers	Primary B cells from cord blood	blood

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