Variant report

Variant	rs10505207
Chromosome Location	chr8:114700007-114700008
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10088331	0.87[ASN][1000 genomes]
rs10088339	0.84[ASN][1000 genomes]
rs10102855	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10105039	0.85[ASN][1000 genomes]
rs10105221	0.85[ASN][1000 genomes]
rs10113088	0.83[ASN][1000 genomes]
rs1025894	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10505206	0.85[ASN][1000 genomes]
rs10955672	0.83[ASN][1000 genomes]
rs12335168	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12386865	0.84[ASN][1000 genomes]
rs12386964	0.85[ASN][1000 genomes]
rs12677871	0.82[ASN][1000 genomes]
rs12681503	0.83[ASN][1000 genomes]
rs1348382	0.87[ASN][1000 genomes]
rs1452755	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1597862	0.85[ASN][1000 genomes]
rs16884960	0.86[ASN][1000 genomes]
rs16884999	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28477627	0.83[ASN][1000 genomes]
rs28579378	0.83[ASN][1000 genomes]
rs28825376	0.83[ASN][1000 genomes]
rs62522065	0.83[ASN][1000 genomes]
rs734621	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs734622	0.84[ASN][1000 genomes]
rs7816794	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7825903	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7826236	0.83[ASN][1000 genomes]
rs7826446	0.83[ASN][1000 genomes]
rs7831447	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7833423	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817379	chr8:114338391-115011632	Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv818650	chr8:114574863-115477600	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2758168	chr8:114575703-115321957	Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv2759636	chr8:114575703-115321957	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv891335	chr8:114589007-114725064	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv891336	chr8:114667112-114753522	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1851155	chr8:114673166-114773729	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3327619	chr8:114698979-114741570	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10505207	RAD21	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:114698200-114703400	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr8:114698200-114703600	Weak transcription	Monocytes-CD14+_RO01746	blood

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