Variant report

Variant	rs10260313
Chromosome Location	chr13:39046492-39046493
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10081311	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10227723	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10247653	0.86[EUR][1000 genomes]
rs11769968	0.83[EUR][1000 genomes]
rs12670111	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1863129	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2042539	0.89[EUR][1000 genomes]
rs2081394	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2113761	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2113762	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2113765	0.85[EUR][1000 genomes]
rs2194649	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2216914	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2330525	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2330529	0.85[EUR][1000 genomes]
rs2330531	0.86[EUR][1000 genomes]
rs3919595	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4078760	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4947811	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6952276	0.88[EUR][1000 genomes]
rs6958150	0.86[EUR][1000 genomes]
rs6961107	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6971950	0.89[EUR][1000 genomes]
rs7458376	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs890044	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs890045	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1817566	chr13:39021562-39081413	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv1828009	chr13:39021562-39081413	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv561513	chr13:39022191-39060049	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv561514	chr13:39033242-39064286	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv1800401	chr13:39045401-39060049	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1803634	chr13:39045401-39060049	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv1831414	chr13:39045401-39060049	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39046200-39061800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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