Variant report

Variant	rs2113765
Chromosome Location	chr7:53608409-53608410
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10081311	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10227723	0.92[EUR][1000 genomes]
rs10247653	0.94[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10260313	0.85[EUR][1000 genomes]
rs11769968	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12670111	0.94[CEU][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1863129	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2042539	0.90[EUR][1000 genomes]
rs2081394	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2113761	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2113762	0.93[EUR][1000 genomes]
rs2194649	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2216914	0.87[EUR][1000 genomes]
rs2330525	0.92[EUR][1000 genomes]
rs2330529	0.94[CEU][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2330531	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3919595	0.92[EUR][1000 genomes]
rs4078760	0.92[EUR][1000 genomes]
rs4947433	0.92[EUR][1000 genomes]
rs4947811	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6952276	0.89[EUR][1000 genomes]
rs6958150	0.94[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6961107	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6971950	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7458376	0.94[CEU][hapmap];0.89[YRI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs890044	0.90[EUR][1000 genomes]
rs890045	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888034	chr7:53026365-53611898	Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv888039	chr7:53232207-53611898	Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv948546	chr7:53538304-54337148	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1016530	chr7:53587780-53620090	Bivalent Enhancer Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1023940	chr7:53600769-53631566	Weak transcription Enhancers Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
6	nsv538851	chr7:53600769-53631566	Enhancers Weak transcription Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
7	esv2761330	chr7:53601598-53632542	Enhancers Weak transcription Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
8	nsv607024	chr7:53602556-53628253	Enhancers Bivalent Enhancer Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:53607800-53610000	Enhancers	Liver	Liver

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