Variant report

Variant	rs10260738
Chromosome Location	chr7:80595391-80595392
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80547240..80552191-chr7:80593459..80597808,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000075223	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10215069	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10215246	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10215337	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10215451	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10215608	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10215609	1.00[AMR][1000 genomes]
rs10215716	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10215723	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10215938	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10216033	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10224258	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10228089	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10245065	1.00[EUR][1000 genomes]
rs10250413	1.00[TSI][hapmap]
rs10251242	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10252612	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10261021	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10274002	1.00[AMR][1000 genomes]
rs13437783	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13437839	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28376330	1.00[EUR][1000 genomes]
rs28635331	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56055586	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57516492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58297146	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58739233	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59251587	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60720818	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60847825	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61124178	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73378531	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73378533	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73378553	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73378561	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73378563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73378567	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73709387	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73709388	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9655877	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv888549	chr7:80553950-80652059	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv888550	chr7:80584388-80644661	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80587000-80597000	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links