Variant report

Variant	rs9655877
Chromosome Location	chr7:80496034-80496035
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:80487627..80489862-chr7:80494546..80496217,2	MCF-7	breast:
2	chr7:80493946..80496743-chr7:80499453..80502290,2	K562	blood:
3	chr7:80489463..80491752-chr7:80494640..80498059,4	MCF-7	breast:
4	chr7:80493856..80496542-chr7:80498485..80501275,3	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10215069	1.00[EUR][1000 genomes]
rs10215246	1.00[EUR][1000 genomes]
rs10215337	1.00[EUR][1000 genomes]
rs10215451	1.00[EUR][1000 genomes]
rs10215608	1.00[EUR][1000 genomes]
rs10215716	1.00[EUR][1000 genomes]
rs10215723	1.00[EUR][1000 genomes]
rs10215938	1.00[EUR][1000 genomes]
rs10216033	1.00[EUR][1000 genomes]
rs10224258	1.00[EUR][1000 genomes]
rs10228089	1.00[EUR][1000 genomes]
rs10245065	1.00[EUR][1000 genomes]
rs10251242	1.00[EUR][1000 genomes]
rs10252612	1.00[EUR][1000 genomes]
rs10260738	1.00[EUR][1000 genomes]
rs10261021	1.00[EUR][1000 genomes]
rs13437783	1.00[EUR][1000 genomes]
rs13437839	1.00[EUR][1000 genomes]
rs28376330	1.00[EUR][1000 genomes]
rs28635331	1.00[EUR][1000 genomes]
rs56055586	1.00[EUR][1000 genomes]
rs57516492	1.00[EUR][1000 genomes]
rs58297146	1.00[EUR][1000 genomes]
rs58739233	1.00[EUR][1000 genomes]
rs59251587	1.00[EUR][1000 genomes]
rs60720818	1.00[EUR][1000 genomes]
rs60847825	1.00[EUR][1000 genomes]
rs61124178	1.00[EUR][1000 genomes]
rs73378531	1.00[EUR][1000 genomes]
rs73378533	1.00[EUR][1000 genomes]
rs73378553	1.00[EUR][1000 genomes]
rs73378561	1.00[EUR][1000 genomes]
rs73378563	1.00[EUR][1000 genomes]
rs73378567	1.00[EUR][1000 genomes]
rs73709387	1.00[EUR][1000 genomes]
rs73709388	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1028776	chr7:80414636-80555284	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80460400-80514600	Weak transcription	Left Ventricle	heart
2	chr7:80471800-80532600	Weak transcription	Fetal Stomach	stomach
3	chr7:80472600-80498400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr7:80474400-80499400	Weak transcription	Psoas Muscle	Psoas
5	chr7:80484800-80506200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr7:80486400-80502400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:80487800-80498000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr7:80489000-80498200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr7:80489200-80496800	Weak transcription	Fetal Brain Male	brain
10	chr7:80489200-80498000	Weak transcription	Fetal Intestine Small	intestine
11	chr7:80489200-80498400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr7:80489200-80502200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr7:80489400-80498400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr7:80489400-80498400	Weak transcription	NH-A	brain
15	chr7:80490200-80498800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr7:80490200-80498800	Weak transcription	Colon Smooth Muscle	Colon
17	chr7:80490200-80498800	Weak transcription	HMEC	breast
18	chr7:80490200-80499200	Weak transcription	NHEK	skin
19	chr7:80490200-80502400	Weak transcription	NHDF-Ad	bronchial
20	chr7:80490400-80502400	Weak transcription	NHLF	lung
21	chr7:80491400-80497000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr7:80491600-80498800	Weak transcription	HSMM	muscle
23	chr7:80493600-80502400	Weak transcription	Fetal Muscle Leg	muscle
24	chr7:80493800-80499000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr7:80494800-80496600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr7:80495200-80498400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr7:80495400-80499600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr7:80496000-80496200	Weak transcription	A549	lung
29	chr7:80496000-80496600	Weak transcription	Fetal Intestine Large	intestine
30	chr7:80496000-80497400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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