Variant report

Variant	rs10261431
Chromosome Location	chr7:103528941-103528942
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:103528310..103530000-chr7:103532562..103534288,2	K562	blood:
2	chr7:103527274..103529978-chr7:103557277..103559784,3	K562	blood:
3	chr7:103527274..103529840-chr7:103557277..103559784,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10226733	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10227303	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10227818	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10228185	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10231740	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10257331	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10257449	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10270086	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10270408	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10278412	0.84[AFR][1000 genomes]
rs28583006	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28637770	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28708679	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28776782	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs39400	0.83[ASN][1000 genomes]
rs39401	0.83[ASN][1000 genomes]
rs39403	0.83[ASN][1000 genomes]
rs39404	0.83[ASN][1000 genomes]
rs39406	0.83[ASN][1000 genomes]
rs6465939	0.85[AFR][1000 genomes]
rs6942790	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6954763	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6979556	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73416941	0.81[ASN][1000 genomes]
rs73712281	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73712282	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1843940	chr7:103421702-103590285	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103520800-103529200	Weak transcription	HepG2	liver
2	chr7:103526800-103531000	Enhancers	K562	blood
3	chr7:103527800-103529600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:103528200-103530400	Enhancers	Fetal Heart	heart
5	chr7:103528800-103529200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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