Variant report

Variant	rs10278412
Chromosome Location	chr7:103523963-103523964
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10226733	0.85[AFR][1000 genomes]
rs10227303	0.87[AFR][1000 genomes]
rs10227818	0.86[AFR][1000 genomes]
rs10228185	0.86[AFR][1000 genomes]
rs10231740	0.86[AFR][1000 genomes]
rs10257331	0.86[AFR][1000 genomes]
rs10257449	0.86[AFR][1000 genomes]
rs10261431	0.84[AFR][1000 genomes]
rs10270086	0.84[AFR][1000 genomes]
rs10270408	0.85[AFR][1000 genomes]
rs3886303	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3908281	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs39352	0.84[EUR][1000 genomes]
rs39353	0.83[EUR][1000 genomes]
rs39354	0.83[EUR][1000 genomes]
rs39355	0.83[EUR][1000 genomes]
rs39356	0.83[EUR][1000 genomes]
rs39357	0.82[EUR][1000 genomes]
rs39358	0.83[EUR][1000 genomes]
rs39359	0.83[EUR][1000 genomes]
rs39360	0.83[EUR][1000 genomes]
rs39361	0.83[EUR][1000 genomes]
rs39362	0.81[EUR][1000 genomes]
rs39363	0.83[EUR][1000 genomes]
rs39364	0.83[EUR][1000 genomes]
rs39365	0.83[EUR][1000 genomes]
rs39366	0.83[EUR][1000 genomes]
rs39367	0.83[EUR][1000 genomes]
rs39368	0.83[EUR][1000 genomes]
rs39369	0.84[EUR][1000 genomes]
rs39370	0.83[EUR][1000 genomes]
rs39371	0.84[EUR][1000 genomes]
rs39372	0.84[EUR][1000 genomes]
rs39373	0.85[EUR][1000 genomes]
rs39374	0.84[EUR][1000 genomes]
rs39375	0.84[EUR][1000 genomes]
rs39378	0.84[EUR][1000 genomes]
rs39380	0.84[EUR][1000 genomes]
rs39382	0.85[EUR][1000 genomes]
rs39383	0.85[EUR][1000 genomes]
rs39384	0.84[EUR][1000 genomes]
rs39385	0.84[EUR][1000 genomes]
rs39388	0.81[EUR][1000 genomes]
rs39390	0.84[EUR][1000 genomes]
rs39391	0.84[EUR][1000 genomes]
rs39393	0.84[EUR][1000 genomes]
rs39396	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs39398	0.85[EUR][1000 genomes]
rs39399	0.85[EUR][1000 genomes]
rs39400	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs39401	0.92[ASN][1000 genomes]
rs39403	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs39404	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs39406	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4727576	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4729935	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6465939	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6465942	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6944760	0.89[EUR][1000 genomes]
rs6954763	0.87[AFR][1000 genomes]
rs6960198	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6979556	0.86[AFR][1000 genomes]
rs73712281	0.86[AFR][1000 genomes]
rs73712282	0.86[AFR][1000 genomes]
rs7784621	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9986961	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1843940	chr7:103421702-103590285	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103520800-103529200	Weak transcription	HepG2	liver
2	chr7:103523800-103524200	Enhancers	K562	blood

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