Variant report

Variant	rs3886303
Chromosome Location	chr7:103510310-103510311
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103500765..103502800-chr7:103508412..103510448,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10278412	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3908281	0.84[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs39352	0.91[EUR][1000 genomes]
rs39353	0.92[CEU][hapmap];0.92[GIH][hapmap];0.81[MEX][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes]
rs39354	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs39355	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs39356	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs39357	0.92[CEU][hapmap];0.88[YRI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs39358	0.92[CEU][hapmap];0.96[GIH][hapmap];0.81[MEX][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes]
rs39359	0.92[CEU][hapmap];0.96[GIH][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.88[YRI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs39360	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs39361	0.92[CEU][hapmap];0.84[YRI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs39362	0.92[CEU][hapmap];0.96[GIH][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes]
rs39363	0.92[CEU][hapmap];0.92[GIH][hapmap];0.81[MEX][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes]
rs39364	0.91[EUR][1000 genomes]
rs39365	0.92[CEU][hapmap];0.96[GIH][hapmap];0.88[TSI][hapmap];0.90[EUR][1000 genomes]
rs39366	0.92[CEU][hapmap];0.96[GIH][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes]
rs39367	0.92[CEU][hapmap];0.96[GIH][hapmap];0.81[MEX][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes]
rs39368	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs39369	0.92[CEU][hapmap];0.96[GIH][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs39370	0.91[EUR][1000 genomes]
rs39371	0.93[EUR][1000 genomes]
rs39372	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs39373	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs39374	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs39375	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs39378	0.92[EUR][1000 genomes]
rs39380	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs39382	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs39383	0.92[CEU][hapmap];0.96[GIH][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes]
rs39384	0.92[CEU][hapmap];0.96[GIH][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs39385	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs39388	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs39390	0.89[EUR][1000 genomes]
rs39391	0.92[EUR][1000 genomes]
rs39393	0.91[EUR][1000 genomes]
rs39396	0.92[CEU][hapmap];0.91[GIH][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.81[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs39398	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs39399	0.92[CEU][hapmap];0.88[GIH][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs39400	0.92[CEU][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs39401	0.92[ASN][1000 genomes]
rs39403	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs39404	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs39406	0.92[CEU][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4727576	0.92[CEU][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4729935	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6465939	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6465942	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6942790	0.83[AFR][1000 genomes]
rs6944760	0.92[CEU][hapmap];0.88[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6960198	0.92[CEU][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7784621	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9986961	1.00[ASW][hapmap];0.92[CEU][hapmap];0.92[GIH][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1843940	chr7:103421702-103590285	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1030128	chr7:103489028-103517045	Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs3886303	ORAI2	cis	cerebellum	SCAN
rs3886303	PILRA	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103498200-103519800	Weak transcription	K562	blood
2	chr7:103508800-103519400	Weak transcription	HepG2	liver

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