Variant report

Variant	rs6960198
Chromosome Location	chr7:103520630-103520631
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103514830..103517778-chr7:103519568..103522214,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10278412	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3886303	0.92[CEU][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3908281	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs39352	0.86[EUR][1000 genomes]
rs39353	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs39354	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs39355	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs39356	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs39357	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs39358	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs39359	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs39360	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs39361	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs39362	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs39363	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs39364	0.86[EUR][1000 genomes]
rs39365	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs39366	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs39367	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs39368	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs39369	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs39370	0.86[EUR][1000 genomes]
rs39371	0.87[EUR][1000 genomes]
rs39372	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs39373	1.00[CEU][hapmap];0.83[YRI][hapmap];0.88[EUR][1000 genomes]
rs39374	0.87[EUR][1000 genomes]
rs39375	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs39378	0.87[EUR][1000 genomes]
rs39380	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs39382	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs39383	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs39384	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs39385	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs39388	0.83[EUR][1000 genomes]
rs39390	0.85[EUR][1000 genomes]
rs39391	0.87[EUR][1000 genomes]
rs39393	0.87[EUR][1000 genomes]
rs39396	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs39398	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs39399	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs39400	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs39401	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs39403	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs39404	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs39406	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4727576	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4729935	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6465939	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6465942	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6942790	0.87[AFR][1000 genomes]
rs6944760	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6954763	1.00[JPT][hapmap]
rs7784621	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9986961	1.00[CEU][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1843940	chr7:103421702-103590285	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103519400-103520800	Enhancers	HepG2	liver
2	chr7:103519600-103521400	Enhancers	Brain Germinal Matrix	brain
3	chr7:103520200-103523800	Weak transcription	K562	blood

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