Variant report

Variant	rs10262064
Chromosome Location	chr7:139528390-139528391
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10215460	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10235490	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10261500	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10271046	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10279720	0.87[AMR][1000 genomes]
rs28377901	1.00[AMR][1000 genomes]
rs56095009	1.00[AMR][1000 genomes]
rs57376594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58946576	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59027682	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59686482	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73733506	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73733509	0.87[AMR][1000 genomes]
rs73733578	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020234	chr7:139377822-139661964	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1032711	chr7:139411404-139684043	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv464732	chr7:139424022-139654256	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv608472	chr7:139424022-139654256	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1018712	chr7:139429703-139658014	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv464733	chr7:139491967-139539218	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv608473	chr7:139491967-139539218	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139517200-139529200	Weak transcription	Right Atrium	heart
2	chr7:139525400-139528400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr7:139525600-139529000	Weak transcription	Ovary	ovary
4	chr7:139526200-139528800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr7:139526200-139529000	Weak transcription	NH-A	brain
6	chr7:139526200-139530000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:139526400-139528400	Weak transcription	Fetal Lung	lung
8	chr7:139526400-139529000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr7:139526400-139535000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:139526600-139528600	Weak transcription	Spleen	Spleen
11	chr7:139527000-139528400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr7:139527000-139528400	Weak transcription	Lung	lung
13	chr7:139527400-139528400	Enhancers	Primary B cells from cord blood	blood
14	chr7:139528000-139529000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr7:139528200-139528400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
16	chr7:139528200-139528600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr7:139528200-139528600	Enhancers	Primary T cells from cord blood	blood
18	chr7:139528200-139528600	Enhancers	Primary hematopoietic stem cells	blood
19	chr7:139528200-139528600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr7:139528200-139528600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
21	chr7:139528200-139528600	Enhancers	Rectal Mucosa Donor 29	rectum
22	chr7:139528200-139528600	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr7:139528200-139528800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr7:139528200-139528800	Enhancers	Placenta	Placenta
25	chr7:139528200-139528800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
26	chr7:139528200-139529000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr7:139528200-139529000	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr7:139528200-139529000	Enhancers	Primary B cells from peripheral blood	blood
29	chr7:139528200-139529000	Enhancers	Primary T cells fromperipheralblood	blood
30	chr7:139528200-139529000	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr7:139528200-139529000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr7:139528200-139529000	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr7:139528200-139529000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
34	chr7:139528200-139529000	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr7:139528200-139529000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr7:139528200-139529000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
37	chr7:139528200-139529000	Enhancers	Fetal Thymus	thymus
38	chr7:139528200-139529000	Enhancers	Stomach Mucosa	stomach
39	chr7:139528200-139529000	Enhancers	Thymus	Thymus
40	chr7:139528200-139529200	Enhancers	Gastric	stomach
41	chr7:139528200-139529400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr7:139528200-139529400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
43	chr7:139528200-139531400	Enhancers	Fetal Kidney	kidney
44	chr7:139528200-139532000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood

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