Variant report

Variant	rs10271046
Chromosome Location	chr7:139540467-139540468
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:139477083..139479483-chr7:139538319..139540657,2	K562	blood:
2	chr7:139539840..139543405-chr7:139545009..139547964,3	K562	blood:
3	chr7:139540100..139542008-chr7:139632227..139634589,2	K562	blood:
4	chr7:139538171..139540494-chr7:139550630..139553046,2	K562	blood:

Variant related genes	Relation type
ENSG00000064393	Chromatin interaction
ENSG00000059377	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10215460	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10235490	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10252208	1.00[MEX][hapmap]
rs10255449	1.00[MEX][hapmap]
rs10261500	0.92[ASW][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs10261757	1.00[MEX][hapmap]
rs10262064	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10279720	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17161128	1.00[MEX][hapmap]
rs17161198	1.00[MEX][hapmap]
rs17161200	1.00[MEX][hapmap]
rs17161201	1.00[MEX][hapmap]
rs17161202	1.00[MEX][hapmap]
rs17161230	1.00[MEX][hapmap]
rs17161272	1.00[MEX][hapmap]
rs1859568	1.00[MEX][hapmap]
rs2158667	1.00[MEX][hapmap]
rs28377901	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4529	1.00[MEX][hapmap]
rs56095009	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57376594	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58946576	1.00[AMR][1000 genomes]
rs59027682	1.00[AMR][1000 genomes]
rs59686482	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6954520	0.83[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap]
rs6963499	1.00[MEX][hapmap];0.85[MKK][hapmap]
rs6963553	1.00[MEX][hapmap]
rs6964028	1.00[MEX][hapmap]
rs73733506	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73733509	0.87[AMR][1000 genomes]
rs73733578	1.00[AMR][1000 genomes]
rs7777901	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020234	chr7:139377822-139661964	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1032711	chr7:139411404-139684043	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv464732	chr7:139424022-139654256	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv608472	chr7:139424022-139654256	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1018712	chr7:139429703-139658014	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv831156	chr7:139532318-139694326	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139531200-139542000	Weak transcription	Right Atrium	heart
2	chr7:139531400-139542200	Weak transcription	Spleen	Spleen
3	chr7:139531400-139544600	Weak transcription	Gastric	stomach
4	chr7:139531400-139553800	Weak transcription	Primary T cells from cord blood	blood
5	chr7:139531400-139572600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr7:139531600-139542400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr7:139532000-139540600	Weak transcription	Esophagus	oesophagus
8	chr7:139538000-139541800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr7:139538200-139540600	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr7:139538400-139541800	Weak transcription	GM12878-XiMat	blood
11	chr7:139538600-139541400	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr7:139538800-139540600	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr7:139539200-139540600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr7:139539400-139540600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr7:139539400-139542000	Weak transcription	Fetal Lung	lung
16	chr7:139540000-139540800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr7:139540000-139540800	Strong transcription	Primary hematopoietic stem cells	blood
18	chr7:139540200-139540600	Weak transcription	Lung	lung
19	chr7:139540200-139540800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr7:139540400-139540800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
21	chr7:139540400-139540800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr7:139540400-139541000	Strong transcription	Thymus	Thymus

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