Variant report

Variant	rs1859568
Chromosome Location	chr7:139581874-139581875
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:139573813..139576189-chr7:139580530..139582169,2	K562	blood:
2	chr7:139581289..139583403-chr7:139592961..139595759,2	K562	blood:
3	chr7:139567575..139569842-chr7:139580648..139582227,2	K562	blood:
4	chr7:139570493..139572036-chr7:139580707..139582614,2	K562	blood:
5	chr7:139578936..139582458-chr7:139673228..139676446,3	K562	blood:
6	chr7:139579614..139583273-chr7:139583440..139586485,4	K562	blood:
7	chr7:139574689..139577649-chr7:139580530..139584809,4	K562	blood:

No data

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10252208	1.00[MEX][hapmap]
rs10255449	1.00[MEX][hapmap]
rs10261500	1.00[MEX][hapmap]
rs10261757	1.00[MEX][hapmap]
rs10271046	1.00[MEX][hapmap]
rs17161128	1.00[MEX][hapmap]
rs17161175	0.85[GIH][hapmap];1.00[TSI][hapmap]
rs17161190	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs17161198	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs17161199	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs17161200	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs17161201	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs17161202	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17161226	1.00[EUR][1000 genomes]
rs17161230	1.00[MEX][hapmap]
rs17161239	0.85[GIH][hapmap];0.90[EUR][1000 genomes]
rs17161272	1.00[MEX][hapmap]
rs2158667	1.00[MEX][hapmap]
rs4529	1.00[MEX][hapmap]
rs58772144	1.00[EUR][1000 genomes]
rs6954520	1.00[MEX][hapmap]
rs6963499	1.00[MEX][hapmap]
rs6963553	1.00[MEX][hapmap]
rs6964028	1.00[MEX][hapmap]
rs73734134	1.00[EUR][1000 genomes]
rs7777901	1.00[ASW][hapmap];1.00[MEX][hapmap]
rs8192812	1.00[ASW][hapmap]
rs8192842	1.00[ASW][hapmap]
rs9886217	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020234	chr7:139377822-139661964	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1032711	chr7:139411404-139684043	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv464732	chr7:139424022-139654256	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv608472	chr7:139424022-139654256	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1018712	chr7:139429703-139658014	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv831156	chr7:139532318-139694326	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1019001	chr7:139558216-139841268	Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
8	nsv1029099	chr7:139558216-139869148	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
9	nsv608474	chr7:139579177-139586807	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv889244	chr7:139579177-139607500	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139567400-139598400	Weak transcription	Primary T cells from cord blood	blood
2	chr7:139570000-139587800	Weak transcription	Primary B cells from cord blood	blood
3	chr7:139571200-139596800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:139571600-139582400	Weak transcription	Colonic Mucosa	Colon
5	chr7:139571800-139584000	Weak transcription	Fetal Kidney	kidney
6	chr7:139573600-139586600	Weak transcription	Right Atrium	heart
7	chr7:139573800-139597600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr7:139576000-139582800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr7:139576400-139583600	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr7:139576800-139583600	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr7:139577000-139584200	Weak transcription	Spleen	Spleen
12	chr7:139577000-139593800	Weak transcription	Lung	lung
13	chr7:139577000-139612400	Weak transcription	Thymus	Thymus
14	chr7:139577200-139583800	Weak transcription	Fetal Thymus	thymus
15	chr7:139577400-139584200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr7:139577600-139583800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr7:139578600-139584800	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr7:139579800-139583800	Weak transcription	Gastric	stomach
19	chr7:139580200-139585600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr7:139580200-139588800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr7:139580400-139583000	Weak transcription	Stomach Mucosa	stomach
22	chr7:139580400-139583800	Weak transcription	K562	blood
23	chr7:139580600-139583800	Weak transcription	Duodenum Mucosa	Duodenum
24	chr7:139581200-139582000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr7:139581200-139582600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr7:139581400-139582400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr7:139581400-139583000	Strong transcription	Primary hematopoietic stem cells	blood

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