Variant report

Variant	rs7777901
Chromosome Location	chr7:139669703-139669704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:139462179..139464547-chr7:139667551..139670371,2	K562	blood:
2	chr7:139588556..139591005-chr7:139669573..139671349,2	K562	blood:
3	chr7:139466723..139468543-chr7:139667952..139670292,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10252208	1.00[MEX][hapmap]
rs10255449	1.00[MEX][hapmap]
rs10261500	1.00[MEX][hapmap]
rs10261757	1.00[MEX][hapmap]
rs10271046	1.00[MEX][hapmap]
rs17161128	1.00[MEX][hapmap]
rs17161198	1.00[ASW][hapmap];1.00[MEX][hapmap]
rs17161200	1.00[ASW][hapmap];1.00[MEX][hapmap]
rs17161201	1.00[ASW][hapmap];1.00[MEX][hapmap]
rs17161202	1.00[ASW][hapmap];1.00[MEX][hapmap]
rs17161230	1.00[MEX][hapmap]
rs17161272	1.00[MEX][hapmap]
rs1859568	1.00[ASW][hapmap];1.00[MEX][hapmap]
rs2158667	1.00[MEX][hapmap]
rs4529	1.00[MEX][hapmap]
rs6954520	1.00[MEX][hapmap]
rs6963553	1.00[MEX][hapmap]
rs6964028	1.00[MEX][hapmap]
rs6971110	1.00[AMR][1000 genomes]
rs7794349	1.00[AMR][1000 genomes]
rs8192812	1.00[ASW][hapmap]
rs8192842	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032711	chr7:139411404-139684043	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv831156	chr7:139532318-139694326	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1019001	chr7:139558216-139841268	Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1029099	chr7:139558216-139869148	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139651400-139670000	Weak transcription	Gastric	stomach
2	chr7:139652200-139691600	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr7:139653000-139678200	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr7:139653200-139672200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr7:139653200-139678000	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr7:139653400-139676000	Weak transcription	Adipose Nuclei	Adipose
7	chr7:139654600-139677600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr7:139655000-139677800	Weak transcription	Primary B cells from cord blood	blood
9	chr7:139661800-139670200	Weak transcription	K562	blood
10	chr7:139662600-139675000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr7:139664000-139679000	Weak transcription	Fetal Intestine Small	intestine
12	chr7:139664800-139671000	Weak transcription	Lung	lung
13	chr7:139667200-139670600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr7:139667200-139670800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr7:139667200-139671000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr7:139667200-139680200	Weak transcription	Primary T cells from cord blood	blood
17	chr7:139667200-139680400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr7:139667400-139679800	Weak transcription	Fetal Thymus	thymus
19	chr7:139668000-139670800	Weak transcription	Primary hematopoietic stem cells	blood
20	chr7:139668000-139679800	Weak transcription	Thymus	Thymus
21	chr7:139668400-139669800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr7:139668600-139670000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr7:139668800-139669800	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr7:139668800-139669800	Enhancers	Brain Hippocampus Middle	brain
25	chr7:139668800-139670000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr7:139668800-139670400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr7:139669000-139669800	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr7:139669200-139669800	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr7:139669200-139669800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr7:139669200-139670000	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr7:139669200-139674600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr7:139669200-139677600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr7:139669400-139669800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
34	chr7:139669400-139671200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr7:139669400-139673200	Strong transcription	Spleen	Spleen
36	chr7:139669400-139676600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr7:139669600-139669800	Enhancers	H9 Cell Line	embryonic stem cell
38	chr7:139669600-139670400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr7:139669600-139670800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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