Variant report

Variant	rs4529
Chromosome Location	chr7:139661964-139661965
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:139304359..139307217-chr7:139661480..139664167,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10252208	1.00[MEX][hapmap]
rs10255449	1.00[MEX][hapmap]
rs10261500	1.00[MEX][hapmap]
rs10261757	1.00[MEX][hapmap]
rs10271046	1.00[MEX][hapmap]
rs17161128	1.00[MEX][hapmap]
rs17161198	1.00[MEX][hapmap]
rs17161200	1.00[MEX][hapmap]
rs17161201	1.00[MEX][hapmap]
rs17161202	1.00[MEX][hapmap]
rs17161230	1.00[MEX][hapmap]
rs17161272	1.00[MEX][hapmap]
rs1859568	1.00[MEX][hapmap]
rs2158667	1.00[MEX][hapmap]
rs6954520	1.00[MEX][hapmap]
rs6963553	1.00[MEX][hapmap]
rs6964028	1.00[MEX][hapmap]
rs7777901	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020234	chr7:139377822-139661964	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1032711	chr7:139411404-139684043	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv831156	chr7:139532318-139694326	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1019001	chr7:139558216-139841268	Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv1029099	chr7:139558216-139869148	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv608475	chr7:139659591-139662643	Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139651400-139662400	Weak transcription	Pancreas	Pancrea
2	chr7:139651400-139670000	Weak transcription	Gastric	stomach
3	chr7:139652000-139668400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr7:139652200-139691600	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr7:139652800-139668000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr7:139653000-139678200	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr7:139653200-139672200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr7:139653200-139678000	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr7:139653400-139676000	Weak transcription	Adipose Nuclei	Adipose
10	chr7:139654600-139677600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr7:139655000-139667800	Weak transcription	Colonic Mucosa	Colon
12	chr7:139655000-139677800	Weak transcription	Primary B cells from cord blood	blood
13	chr7:139657400-139664600	Weak transcription	Lung	lung
14	chr7:139658600-139666200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr7:139660200-139666600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr7:139660200-139669200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr7:139660800-139663200	Strong transcription	Primary hematopoietic stem cells	blood
18	chr7:139661200-139668000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr7:139661400-139662000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr7:139661400-139662600	Strong transcription	Spleen	Spleen
21	chr7:139661600-139662400	Strong transcription	Primary T cells from cord blood	blood
22	chr7:139661600-139662600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr7:139661800-139662600	Strong transcription	Fetal Thymus	thymus
24	chr7:139661800-139662600	Strong transcription	Thymus	Thymus
25	chr7:139661800-139666200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr7:139661800-139666600	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr7:139661800-139670200	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links