Variant report

Variant	rs8192842
Chromosome Location	chr7:139671473-139671474
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:139669921..139672279-chr7:139674111..139676897,2	MCF-7	breast:
2	chr7:139619411..139622520-chr7:139671470..139673842,3	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13232844	1.00[CEU][hapmap]
rs17161198	1.00[ASW][hapmap]
rs17161200	1.00[ASW][hapmap]
rs17161201	1.00[ASW][hapmap]
rs17161202	1.00[ASW][hapmap]
rs1859568	1.00[ASW][hapmap]
rs6963442	1.00[YRI][hapmap]
rs7777901	1.00[ASW][hapmap]
rs8192812	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032711	chr7:139411404-139684043	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv831156	chr7:139532318-139694326	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1019001	chr7:139558216-139841268	Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1029099	chr7:139558216-139869148	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139652200-139691600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr7:139653000-139678200	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr7:139653200-139672200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:139653200-139678000	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr7:139653400-139676000	Weak transcription	Adipose Nuclei	Adipose
6	chr7:139654600-139677600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr7:139655000-139677800	Weak transcription	Primary B cells from cord blood	blood
8	chr7:139662600-139675000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr7:139664000-139679000	Weak transcription	Fetal Intestine Small	intestine
10	chr7:139667200-139680200	Weak transcription	Primary T cells from cord blood	blood
11	chr7:139667200-139680400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr7:139667400-139679800	Weak transcription	Fetal Thymus	thymus
13	chr7:139668000-139679800	Weak transcription	Thymus	Thymus
14	chr7:139669200-139674600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:139669200-139677600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr7:139669400-139673200	Strong transcription	Spleen	Spleen
17	chr7:139669400-139676600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr7:139670400-139672000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr7:139670400-139674000	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr7:139670400-139674600	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr7:139670600-139672200	Weak transcription	K562	blood
22	chr7:139670600-139673400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr7:139670800-139672800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr7:139670800-139673400	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr7:139670800-139673400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr7:139670800-139674000	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr7:139670800-139674200	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr7:139670800-139675400	Strong transcription	Primary hematopoietic stem cells	blood
29	chr7:139671000-139672000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
30	chr7:139671000-139672000	Strong transcription	Lung	lung
31	chr7:139671000-139673200	Enhancers	H9 Cell Line	embryonic stem cell
32	chr7:139671000-139673400	Weak transcription	Esophagus	oesophagus
33	chr7:139671000-139674400	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr7:139671000-139676600	Enhancers	H1 Cell Line	embryonic stem cell
35	chr7:139671200-139674200	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr7:139671200-139674600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr7:139671400-139671800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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