Variant report

Variant	rs7794349
Chromosome Location	chr7:139677182-139677183
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:139476075..139481876-chr7:139671919..139678809,13	K562	blood:
2	chr7:139609242..139611972-chr7:139675642..139677327,2	K562	blood:
3	chr7:139476155..139478705-chr7:139676091..139678809,4	K562	blood:
4	chr7:139673731..139678896-chr7:139679377..139683026,7	K562	blood:
5	chr7:139179100..139181035-chr7:139675423..139678209,2	K562	blood:
6	chr7:139591177..139593803-chr7:139676228..139677998,2	K562	blood:

Variant related genes	Relation type
ENSG00000059377	Chromatin interaction
ENSG00000064393	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6971110	1.00[AMR][1000 genomes]
rs7777901	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032711	chr7:139411404-139684043	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv831156	chr7:139532318-139694326	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1019001	chr7:139558216-139841268	Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1029099	chr7:139558216-139869148	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	esv1828807	chr7:139675550-139727974	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139652200-139691600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr7:139653000-139678200	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr7:139653200-139678000	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr7:139654600-139677600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr7:139655000-139677800	Weak transcription	Primary B cells from cord blood	blood
6	chr7:139664000-139679000	Weak transcription	Fetal Intestine Small	intestine
7	chr7:139667200-139680200	Weak transcription	Primary T cells from cord blood	blood
8	chr7:139667200-139680400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr7:139667400-139679800	Weak transcription	Fetal Thymus	thymus
10	chr7:139668000-139679800	Weak transcription	Thymus	Thymus
11	chr7:139669200-139677600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr7:139672000-139704400	Weak transcription	Lung	lung
13	chr7:139673200-139679800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr7:139673200-139688000	Weak transcription	Spleen	Spleen
15	chr7:139674200-139680000	Weak transcription	Fetal Kidney	kidney
16	chr7:139674400-139683000	Weak transcription	Fetal Lung	lung
17	chr7:139675400-139680000	Weak transcription	Primary hematopoietic stem cells	blood
18	chr7:139676000-139680000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr7:139676200-139677600	Bivalent/Poised TSS	HepG2	liver
20	chr7:139676200-139679800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr7:139676400-139677200	Active TSS	K562	blood
22	chr7:139676400-139679600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr7:139676600-139680400	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr7:139676600-139681400	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr7:139676600-139685000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr7:139676800-139680000	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr7:139676800-139680000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr7:139676800-139680400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr7:139677000-139680400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links