Variant report

Variant	rs10262937
Chromosome Location	chr7:21982448-21982449
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:21920987..21923529-chr7:21981906..21983468,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12669549	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12700337	0.89[CEU][hapmap];0.85[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];0.91[MEX][hapmap];0.88[MKK][hapmap];0.86[TSI][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1534770	0.84[EUR][1000 genomes]
rs3823667	0.88[EUR][1000 genomes]
rs4394298	0.80[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55681513	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6461623	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6946675	0.97[GIH][hapmap];0.83[EUR][1000 genomes]
rs9638794	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1027453	chr7:21918474-21982448	Enhancers Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv870325	chr7:21979039-22120493	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21938600-21984000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:21951600-21982600	Weak transcription	HSMM	muscle
3	chr7:21956600-21983600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr7:21963600-21983600	Weak transcription	Ovary	ovary
5	chr7:21973200-21984200	Weak transcription	Esophagus	oesophagus
6	chr7:21975800-21982600	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr7:21976800-21984000	Weak transcription	Adipose Nuclei	Adipose
8	chr7:21977600-21983400	Weak transcription	Fetal Intestine Small	intestine
9	chr7:21978400-21984000	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr7:21978600-21983400	Enhancers	Colon Smooth Muscle	Colon
11	chr7:21978600-21983400	Enhancers	HUVEC	blood vessel
12	chr7:21978800-21982800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr7:21979200-21983200	Enhancers	H1 Cell Line	embryonic stem cell
14	chr7:21979200-21984000	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr7:21979400-21982800	Weak transcription	HSMMtube	muscle
16	chr7:21979400-21983000	Weak transcription	NHLF	lung
17	chr7:21979400-21984200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr7:21979600-21982600	Weak transcription	NH-A	brain
19	chr7:21979800-21982600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr7:21979800-21983600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr7:21979800-21984000	Weak transcription	Fetal Kidney	kidney
22	chr7:21980200-21984000	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr7:21980400-21982600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr7:21980400-21982600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr7:21980400-21982600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr7:21980400-21982600	Weak transcription	Lung	lung
27	chr7:21980400-21984000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr7:21980400-21984200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr7:21980400-21984200	Weak transcription	Psoas Muscle	Psoas
30	chr7:21980800-21982600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr7:21980800-21982600	Flanking Active TSS	Primary B cells from cord blood	blood
32	chr7:21980800-21983400	Enhancers	NHDF-Ad	bronchial
33	chr7:21980800-21983600	Enhancers	Hela-S3	cervix
34	chr7:21980800-21983800	Enhancers	Rectal Smooth Muscle	rectum
35	chr7:21980800-21984000	Enhancers	Duodenum Mucosa	Duodenum
36	chr7:21981000-21982600	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr7:21981000-21982600	Enhancers	Brain Hippocampus Middle	brain
38	chr7:21981000-21983000	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr7:21981000-21983000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr7:21981000-21983000	Enhancers	Stomach Mucosa	stomach
41	chr7:21981000-21983600	Enhancers	Duodenum Smooth Muscle	Duodenum
42	chr7:21981000-21983800	Enhancers	Rectal Mucosa Donor 31	rectum
43	chr7:21981000-21984000	Enhancers	Primary T helper cells fromperipheralblood	blood
44	chr7:21981000-21984000	Enhancers	Fetal Thymus	thymus
45	chr7:21981200-21982600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr7:21981200-21982600	Enhancers	NHEK	skin
47	chr7:21981200-21983400	Enhancers	Right Ventricle	heart
48	chr7:21981200-21984000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
49	chr7:21981200-21984000	Enhancers	Fetal Lung	lung
50	chr7:21981400-21983400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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