Variant report

Variant	rs10263074
Chromosome Location	chr7:87538063-87538064
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:87505665..87507649-chr7:87536982..87538921,2	K562	blood:
2	chr7:87531813..87533646-chr7:87537666..87539437,2	MCF-7	breast:
3	chr7:87537825..87540593-chr7:87542294..87543828,2	K562	blood:
4	chr7:87533476..87536222-chr7:87537318..87539544,2	K562	blood:

Variant related genes	Relation type
ENSG00000006634	Chromatin interaction
ENSG00000075303	Chromatin interaction

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10215700	0.98[ASN][1000 genomes]
rs10215973	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10216040	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10225955	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10230718	0.98[ASN][1000 genomes]
rs10231094	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10232449	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10235112	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs10235854	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10239922	0.98[ASN][1000 genomes]
rs10244734	0.98[ASN][1000 genomes]
rs10245617	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10245767	1.00[JPT][hapmap];0.80[YRI][hapmap];0.98[ASN][1000 genomes]
rs10247258	0.93[ASN][1000 genomes]
rs10248345	0.91[ASN][1000 genomes]
rs10249603	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10252226	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10253864	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10255051	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10256319	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10258021	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10259182	0.93[ASN][1000 genomes]
rs10261685	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10263159	0.89[YRI][hapmap]
rs10264991	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10266417	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10268868	0.98[ASN][1000 genomes]
rs10269158	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10276409	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10278483	0.89[ASN][1000 genomes]
rs10280397	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10280904	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10281645	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10486997	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10487000	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11972683	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11982729	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12532279	0.93[ASN][1000 genomes]
rs12532358	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12533477	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12535013	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12537294	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12538627	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13437761	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13438341	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17149864	0.89[ASN][1000 genomes]
rs17149924	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17149946	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17149963	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17150006	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17150008	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17169578	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2041049	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2106522	0.86[ASN][1000 genomes]
rs2188523	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2373574	0.93[ASN][1000 genomes]
rs28375568	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28379741	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28452149	0.95[AFR][1000 genomes]
rs28470575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28535601	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28535947	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28537604	0.98[ASN][1000 genomes]
rs28546778	0.98[ASN][1000 genomes]
rs28572147	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28624877	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28627774	0.98[ASN][1000 genomes]
rs28666506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28742881	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28774398	0.93[ASN][1000 genomes]
rs28827241	0.95[AFR][1000 genomes]
rs28847692	0.95[AFR][1000 genomes]
rs28879532	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28890472	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4148727	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6465117	0.86[ASN][1000 genomes]
rs6948061	0.98[ASN][1000 genomes]
rs6952943	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6955897	1.00[CEU][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7794263	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9655953	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9655954	0.98[ASN][1000 genomes]
rs976602	0.93[ASN][1000 genomes]
rs9986978	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888677	chr7:86802025-87781111	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv464622	chr7:86832603-87541248	Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv607725	chr7:86832603-87541248	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv1015862	chr7:87075394-88049798	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv1023352	chr7:87418818-88192925	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	nsv539005	chr7:87418818-88192925	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv888696	chr7:87526944-87594188	Strong transcription Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	nsv525073	chr7:87535096-87812968	Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:87506600-87539600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:87506600-87539600	Weak transcription	Pancreas	Pancrea
3	chr7:87506800-87540400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:87507200-87538400	Weak transcription	Adipose Nuclei	Adipose
5	chr7:87507200-87539200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr7:87507600-87539400	Weak transcription	Fetal Muscle Leg	muscle
7	chr7:87508000-87538200	Weak transcription	Thymus	Thymus
8	chr7:87508200-87538400	Weak transcription	Fetal Brain Female	brain
9	chr7:87508200-87538600	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr7:87508200-87539000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:87508200-87539200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr7:87508200-87539400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr7:87508200-87539600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr7:87508600-87538600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:87510400-87538600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:87515200-87538600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr7:87515200-87538600	Weak transcription	Fetal Kidney	kidney
18	chr7:87516600-87539600	Weak transcription	Spleen	Spleen
19	chr7:87517600-87538600	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr7:87522000-87538600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr7:87522800-87538600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
22	chr7:87523400-87538600	Strong transcription	Fetal Thymus	thymus
23	chr7:87525000-87538400	Weak transcription	NHLF	lung
24	chr7:87526800-87538600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr7:87527600-87538400	Weak transcription	Liver	Liver
26	chr7:87528600-87538600	Weak transcription	Fetal Lung	lung
27	chr7:87529200-87538200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr7:87529200-87538600	Weak transcription	Duodenum Mucosa	Duodenum
29	chr7:87529200-87540000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr7:87529400-87547800	Weak transcription	NHEK	skin
31	chr7:87530200-87540200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr7:87532400-87540000	Weak transcription	Primary B cells from cord blood	blood
33	chr7:87532600-87541600	Weak transcription	HUVEC	blood vessel
34	chr7:87533200-87539800	Weak transcription	Fetal Stomach	stomach
35	chr7:87534200-87538400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr7:87534400-87541800	Weak transcription	Fetal Intestine Small	intestine
37	chr7:87534600-87540000	Weak transcription	Fetal Muscle Trunk	muscle
38	chr7:87535000-87538600	Weak transcription	Primary B cells from peripheral blood	blood
39	chr7:87535000-87540400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr7:87535000-87543000	Weak transcription	HSMM	muscle
41	chr7:87535200-87539000	Weak transcription	A549	lung
42	chr7:87535200-87539400	Weak transcription	NH-A	brain
43	chr7:87535200-87540000	Weak transcription	Fetal Intestine Large	intestine
44	chr7:87535400-87538200	Enhancers	Primary neutrophils fromperipheralblood	blood
45	chr7:87535600-87538800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr7:87535600-87539000	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr7:87535600-87539800	Weak transcription	Left Ventricle	heart
48	chr7:87535800-87538800	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr7:87535800-87540200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr7:87535800-87540400	Weak transcription	Primary T cells fromperipheralblood	blood

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