Variant report

Variant	rs2373574
Chromosome Location	chr7:87340481-87340482
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 139 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:131)

rs_ID	r²[population]
rs10215700	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10215973	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10216040	0.93[ASN][1000 genomes]
rs10225955	0.88[ASN][1000 genomes]
rs10226830	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10226849	0.98[EUR][1000 genomes]
rs10227951	0.98[EUR][1000 genomes]
rs10230718	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10231033	0.90[ASN][1000 genomes]
rs10231094	0.86[ASN][1000 genomes]
rs10232449	0.98[ASN][1000 genomes]
rs10232457	0.93[EUR][1000 genomes]
rs10235854	0.93[ASN][1000 genomes]
rs10237097	0.89[EUR][1000 genomes]
rs10237201	0.93[EUR][1000 genomes]
rs10238564	0.93[EUR][1000 genomes]
rs10239908	0.89[EUR][1000 genomes]
rs10239922	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10244734	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10245617	0.98[ASN][1000 genomes]
rs10245767	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10246786	0.89[EUR][1000 genomes]
rs10247258	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10248345	0.93[ASN][1000 genomes]
rs10249603	0.93[ASN][1000 genomes]
rs10252226	0.98[ASN][1000 genomes]
rs10252990	0.93[EUR][1000 genomes]
rs10253106	0.93[EUR][1000 genomes]
rs10253864	0.93[ASN][1000 genomes]
rs10255051	0.93[ASN][1000 genomes]
rs10256319	0.93[ASN][1000 genomes]
rs10258021	0.98[ASN][1000 genomes]
rs10259182	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10260007	0.93[EUR][1000 genomes]
rs10261685	0.98[ASN][1000 genomes]
rs10263074	0.93[ASN][1000 genomes]
rs10264856	0.98[EUR][1000 genomes]
rs10264991	0.88[ASN][1000 genomes]
rs10266417	0.93[ASN][1000 genomes]
rs10268868	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10269158	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10275831	0.90[ASN][1000 genomes]
rs10276409	0.98[ASN][1000 genomes]
rs10276499	0.98[EUR][1000 genomes]
rs10276819	0.89[EUR][1000 genomes]
rs10278483	0.91[ASN][1000 genomes]
rs10280397	0.93[ASN][1000 genomes]
rs10280686	0.90[ASN][1000 genomes]
rs10280904	0.98[ASN][1000 genomes]
rs10281645	0.98[ASN][1000 genomes]
rs10486997	0.98[ASN][1000 genomes]
rs10487000	0.93[ASN][1000 genomes]
rs10952899	0.98[EUR][1000 genomes]
rs11972683	0.98[ASN][1000 genomes]
rs11982729	0.93[ASN][1000 genomes]
rs12532279	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12532358	0.93[ASN][1000 genomes]
rs12532941	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12533477	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12535013	0.90[ASN][1000 genomes]
rs12537294	0.98[ASN][1000 genomes]
rs12538627	0.93[ASN][1000 genomes]
rs12539395	0.98[EUR][1000 genomes]
rs12540032	0.98[EUR][1000 genomes]
rs12669619	0.89[EUR][1000 genomes]
rs13437761	0.98[ASN][1000 genomes]
rs13438341	0.98[ASN][1000 genomes]
rs13438651	0.95[EUR][1000 genomes]
rs17149840	0.86[ASN][1000 genomes]
rs17149864	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17149924	0.93[ASN][1000 genomes]
rs17149946	0.93[ASN][1000 genomes]
rs17149963	0.93[ASN][1000 genomes]
rs17150006	0.93[ASN][1000 genomes]
rs17150008	0.93[ASN][1000 genomes]
rs17150009	0.89[EUR][1000 genomes]
rs17169578	0.98[ASN][1000 genomes]
rs2041049	0.91[ASN][1000 genomes]
rs2073985	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2106522	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2157926	0.98[EUR][1000 genomes]
rs2188523	0.98[ASN][1000 genomes]
rs2188527	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2188828	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2214101	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2214106	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2285646	0.89[EUR][1000 genomes]
rs2285649	0.98[EUR][1000 genomes]
rs28375568	0.93[ASN][1000 genomes]
rs28379741	0.93[ASN][1000 genomes]
rs28437979	0.98[EUR][1000 genomes]
rs28449219	0.93[EUR][1000 genomes]
rs28449354	0.87[EUR][1000 genomes]
rs28470575	0.88[ASN][1000 genomes]
rs28535601	0.93[ASN][1000 genomes]
rs28535947	0.93[ASN][1000 genomes]
rs28537604	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28546778	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28572147	0.95[ASN][1000 genomes]
rs28624877	0.98[ASN][1000 genomes]
rs28627774	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28642834	0.89[EUR][1000 genomes]
rs28645115	0.98[EUR][1000 genomes]
rs28666506	0.93[ASN][1000 genomes]
rs28742881	0.93[ASN][1000 genomes]
rs28774398	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28831998	0.93[EUR][1000 genomes]
rs28879532	0.98[ASN][1000 genomes]
rs28890472	0.93[ASN][1000 genomes]
rs4148727	0.91[ASN][1000 genomes]
rs4148729	0.90[ASN][1000 genomes]
rs58638862	0.89[EUR][1000 genomes]
rs59058733	0.93[EUR][1000 genomes]
rs6465117	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6948061	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6952943	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6955897	0.88[ASN][1000 genomes]
rs6972098	0.98[EUR][1000 genomes]
rs73706914	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73706916	0.98[EUR][1000 genomes]
rs73706922	0.98[EUR][1000 genomes]
rs73706924	0.98[EUR][1000 genomes]
rs73706950	0.89[EUR][1000 genomes]
rs7790722	0.98[EUR][1000 genomes]
rs7794263	0.93[ASN][1000 genomes]
rs7798074	0.89[EUR][1000 genomes]
rs7801337	0.89[EUR][1000 genomes]
rs9655954	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9655955	0.89[EUR][1000 genomes]
rs976602	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs992422	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888677	chr7:86802025-87781111	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv464622	chr7:86832603-87541248	Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv607725	chr7:86832603-87541248	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv1015862	chr7:87075394-88049798	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv607729	chr7:87326929-87352572	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv888695	chr7:87328502-87430669	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv607730	chr7:87330423-87352572	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv1814479	chr7:87338467-87346819	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:87332600-87360000	Weak transcription	Liver	Liver
2	chr7:87339000-87341200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:87339000-87342600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr7:87339200-87340800	Weak transcription	HUVEC	blood vessel

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