Variant report

Variant	rs2285649
Chromosome Location	chr7:87407431-87407432
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs10215700	0.91[EUR][1000 genomes]
rs10215973	0.96[EUR][1000 genomes]
rs10216040	1.00[CEU][hapmap]
rs10225955	1.00[CEU][hapmap]
rs10226830	0.90[EUR][1000 genomes]
rs10226849	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10227951	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10230718	1.00[EUR][1000 genomes]
rs10231033	1.00[CEU][hapmap]
rs10232457	0.86[CHB][hapmap];0.90[JPT][hapmap];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10233247	1.00[CEU][hapmap]
rs10237097	0.86[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10237201	1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10238564	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10239908	0.86[CHB][hapmap];0.90[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10239922	0.96[EUR][1000 genomes]
rs10244734	0.96[EUR][1000 genomes]
rs10245767	0.91[EUR][1000 genomes]
rs10246786	0.90[JPT][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10247258	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10249603	1.00[CEU][hapmap]
rs10252990	0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10253106	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10254392	1.00[CEU][hapmap]
rs10255051	1.00[CEU][hapmap]
rs10256319	1.00[CEU][hapmap]
rs10259182	1.00[EUR][1000 genomes]
rs10260007	0.86[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10261685	1.00[CEU][hapmap]
rs10263074	1.00[CEU][hapmap]
rs10264856	0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10264991	1.00[CEU][hapmap]
rs10266417	1.00[CEU][hapmap]
rs10268868	0.91[EUR][1000 genomes]
rs10269158	0.95[EUR][1000 genomes]
rs10275831	1.00[CEU][hapmap]
rs10276499	0.86[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10276819	0.86[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10280397	1.00[CEU][hapmap]
rs10487000	1.00[CEU][hapmap]
rs10952899	0.90[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11973812	1.00[CEU][hapmap]
rs11982729	1.00[CEU][hapmap]
rs1202172	0.86[CHB][hapmap]
rs12532279	1.00[EUR][1000 genomes]
rs12532358	1.00[CEU][hapmap]
rs12532941	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12533477	1.00[EUR][1000 genomes]
rs12538627	1.00[CEU][hapmap]
rs12539395	0.86[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12540032	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12669619	0.90[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13438651	0.92[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17149792	1.00[CEU][hapmap]
rs17149810	0.86[CHB][hapmap]
rs17149840	1.00[CEU][hapmap]
rs17149864	0.96[EUR][1000 genomes]
rs17150009	0.92[JPT][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2041049	1.00[CEU][hapmap]
rs2073985	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2106522	0.96[EUR][1000 genomes]
rs2157926	0.92[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2157929	0.92[JPT][hapmap]
rs2188527	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2188530	1.00[CEU][hapmap]
rs2188828	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2214101	0.96[EUR][1000 genomes]
rs2214106	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2285646	0.92[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2373574	0.98[EUR][1000 genomes]
rs28381772	1.00[CEU][hapmap]
rs28381774	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs28381775	1.00[CEU][hapmap]
rs28437979	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28449219	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28449354	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28537604	0.91[EUR][1000 genomes]
rs28546778	0.91[EUR][1000 genomes]
rs28627774	0.91[EUR][1000 genomes]
rs28642834	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28645115	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28742881	1.00[CEU][hapmap]
rs28746492	1.00[CEU][hapmap]
rs28774398	1.00[EUR][1000 genomes]
rs28831998	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4148730	1.00[CEU][hapmap]
rs4148731	1.00[CEU][hapmap]
rs4728705	0.86[CHB][hapmap]
rs4728706	0.86[CHB][hapmap]
rs4728709	0.86[CHB][hapmap]
rs58638862	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59058733	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6465117	0.96[EUR][1000 genomes]
rs6948061	1.00[EUR][1000 genomes]
rs6951067	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs6952943	0.91[EUR][1000 genomes]
rs6955897	1.00[CEU][hapmap]
rs6957599	1.00[CEU][hapmap]
rs6972098	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73706914	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73706916	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73706922	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73706924	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73706950	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7790722	0.92[JPT][hapmap];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7794263	1.00[CEU][hapmap]
rs7796247	1.00[CEU][hapmap]
rs7798074	0.86[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7801337	0.86[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9655954	1.00[EUR][1000 genomes]
rs9655955	0.92[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs976602	1.00[EUR][1000 genomes]
rs992422	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888677	chr7:86802025-87781111	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv464622	chr7:86832603-87541248	Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv607725	chr7:86832603-87541248	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv1015862	chr7:87075394-88049798	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv888695	chr7:87328502-87430669	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv528078	chr7:87397345-87418861	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv970416	chr7:87407303-87419070	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:87406000-87407800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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