Variant report

Variant	rs10265122
Chromosome Location	chr7:68991223-68991224
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10256483	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10257731	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10281633	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10950189	0.88[EUR][1000 genomes]
rs10950190	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11771876	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12155091	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12530810	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12531644	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12538348	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12698802	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12698803	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12698804	0.92[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.94[TSI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13243683	0.90[EUR][1000 genomes]
rs13246613	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1541427	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17137493	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1981585	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1981586	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2108046	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2865169	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28758447	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35245526	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41862	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41863	0.85[EUR][1000 genomes]
rs41865	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4268006	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55714924	0.89[EUR][1000 genomes]
rs56854903	0.91[EUR][1000 genomes]
rs6460521	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6944163	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6946622	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6975413	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6979168	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73437648	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7785268	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7810187	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023885	chr7:68894896-69158290	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv538915	chr7:68894896-69158290	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv916011	chr7:68942155-69330800	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv5782	chr7:68946883-68991904	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10265122	VKORC1L1	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:68984000-68991400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:68984000-68999200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:68990400-68991800	Enhancers	H9 Cell Line	embryonic stem cell
4	chr7:68990600-68991400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:68990800-68991400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:68991000-68992000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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