Variant report

Variant	rs41863
Chromosome Location	chr7:68998010-68998011
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10257731	0.82[EUR][1000 genomes]
rs10265122	0.85[EUR][1000 genomes]
rs10950190	0.82[EUR][1000 genomes]
rs11771876	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12530810	0.81[EUR][1000 genomes]
rs12531644	0.85[EUR][1000 genomes]
rs12538348	0.84[EUR][1000 genomes]
rs12698802	0.82[EUR][1000 genomes]
rs12698803	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12698804	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13246613	0.84[EUR][1000 genomes]
rs1541427	0.82[EUR][1000 genomes]
rs17137493	0.82[EUR][1000 genomes]
rs28758447	0.82[EUR][1000 genomes]
rs35245526	0.80[EUR][1000 genomes]
rs41862	0.81[EUR][1000 genomes]
rs41865	0.84[EUR][1000 genomes]
rs4268006	0.81[EUR][1000 genomes]
rs6946622	0.81[EUR][1000 genomes]
rs73437648	0.80[EUR][1000 genomes]
rs7785268	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023885	chr7:68894896-69158290	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv538915	chr7:68894896-69158290	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv916011	chr7:68942155-69330800	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv997300	chr7:68997989-68998012	Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv1210711	chr7:68997997-68998021	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:68984000-68999200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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