Variant report

Variant	rs10265265
Chromosome Location	chr7:3990601-3990602
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10226220	1.00[AMR][1000 genomes]
rs10232161	1.00[AMR][1000 genomes]
rs10236208	1.00[AMR][1000 genomes]
rs10239119	1.00[AMR][1000 genomes]
rs10239349	1.00[AMR][1000 genomes]
rs10239755	1.00[AMR][1000 genomes]
rs10240764	1.00[AMR][1000 genomes]
rs10240770	1.00[AMR][1000 genomes]
rs10240776	1.00[AMR][1000 genomes]
rs10248032	1.00[AMR][1000 genomes]
rs10249140	1.00[AMR][1000 genomes]
rs10249486	1.00[AMR][1000 genomes]
rs10249617	1.00[AMR][1000 genomes]
rs10250969	1.00[AMR][1000 genomes]
rs10251860	1.00[AMR][1000 genomes]
rs10254942	1.00[AMR][1000 genomes]
rs10260973	1.00[AMR][1000 genomes]
rs10261101	1.00[AMR][1000 genomes]
rs10269172	1.00[AMR][1000 genomes]
rs10271525	1.00[AMR][1000 genomes]
rs10277140	1.00[AMR][1000 genomes]
rs10281035	1.00[AMR][1000 genomes]
rs16871049	1.00[AMR][1000 genomes]
rs28408018	1.00[AMR][1000 genomes]
rs28462157	1.00[AMR][1000 genomes]
rs28532947	1.00[AMR][1000 genomes]
rs28554772	1.00[AMR][1000 genomes]
rs28560779	1.00[AMR][1000 genomes]
rs28581916	1.00[AMR][1000 genomes]
rs28656426	1.00[AMR][1000 genomes]
rs28715920	1.00[AMR][1000 genomes]
rs34758548	1.00[AMR][1000 genomes]
rs56740561	1.00[AMR][1000 genomes]
rs57744825	1.00[AMR][1000 genomes]
rs57761987	1.00[AMR][1000 genomes]
rs57981062	1.00[AMR][1000 genomes]
rs58587403	1.00[AMR][1000 genomes]
rs59408720	1.00[AMR][1000 genomes]
rs60180277	1.00[AMR][1000 genomes]
rs60409549	1.00[AMR][1000 genomes]
rs7801151	1.00[AMR][1000 genomes]
rs9655341	1.00[AMR][1000 genomes]
rs9655342	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021650	chr7:3665232-4577439	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1029406	chr7:3860894-4477095	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv538685	chr7:3860894-4477095	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1026410	chr7:3869104-4383606	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1025497	chr7:3905444-4176032	Enhancers Strong transcription ZNF genes & repeats Genic enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv538686	chr7:3905444-4176032	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv433014	chr7:3910039-4054769	Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv464274	chr7:3955516-4613607	Weak transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv464275	chr7:3955516-4613607	Enhancers Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv464276	chr7:3955516-4613607	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv464277	chr7:3955516-4613607	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv464278	chr7:3955516-4613607	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv605939	chr7:3955516-4613607	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv1019086	chr7:3968656-4044519	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv538687	chr7:3968656-4044519	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3972600-3990800	Weak transcription	Pancreas	Pancrea
2	chr7:3983800-3991200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr7:3987600-3995200	Weak transcription	Esophagus	oesophagus
4	chr7:3988400-4005400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:3988600-3990800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr7:3988600-4010000	Weak transcription	Left Ventricle	heart
7	chr7:3988600-4032600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr7:3988800-3991000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr7:3988800-3994200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr7:3988800-3995000	Weak transcription	Spleen	Spleen
11	chr7:3988800-4001600	Weak transcription	Right Atrium	heart
12	chr7:3989000-3995000	Weak transcription	HSMM	muscle
13	chr7:3989000-3995200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr7:3989200-3991200	Weak transcription	Fetal Stomach	stomach
15	chr7:3989200-3991200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr7:3989200-3991400	Weak transcription	Fetal Brain Female	brain
17	chr7:3989200-3995000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr7:3989200-4013800	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr7:3989400-3997400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr7:3989400-4031000	Weak transcription	Right Ventricle	heart
21	chr7:3989600-3991200	Weak transcription	Fetal Lung	lung
22	chr7:3989800-3991000	Weak transcription	Fetal Intestine Small	intestine
23	chr7:3989800-3991800	Weak transcription	HepG2	liver
24	chr7:3989800-4002400	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr7:3989800-4020800	Weak transcription	Colon Smooth Muscle	Colon
26	chr7:3990000-3999800	Weak transcription	Fetal Brain Male	brain
27	chr7:3990200-3995000	Weak transcription	HSMMtube	muscle
28	chr7:3990200-3995400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr7:3990600-3990800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr7:3990600-3991400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr7:3990600-3991400	Strong transcription	Aorta	Aorta
32	chr7:3990600-3995200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links