Variant report

Variant	rs60180277
Chromosome Location	chr7:4056356-4056357
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10239349	1.00[AMR][1000 genomes]
rs10239755	1.00[AMR][1000 genomes]
rs10240764	1.00[AMR][1000 genomes]
rs10240770	1.00[AMR][1000 genomes]
rs10240776	1.00[AMR][1000 genomes]
rs10249140	1.00[AMR][1000 genomes]
rs10249486	1.00[AMR][1000 genomes]
rs10249617	1.00[AMR][1000 genomes]
rs10251860	1.00[AMR][1000 genomes]
rs10254942	1.00[AMR][1000 genomes]
rs10265265	1.00[AMR][1000 genomes]
rs10269172	1.00[AMR][1000 genomes]
rs16871049	1.00[AMR][1000 genomes]
rs28462157	1.00[AMR][1000 genomes]
rs28560779	1.00[AMR][1000 genomes]
rs34758548	1.00[AMR][1000 genomes]
rs56740561	1.00[AMR][1000 genomes]
rs57761987	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57981062	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58587403	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59408720	1.00[AMR][1000 genomes]
rs7801151	1.00[AMR][1000 genomes]
rs9655341	1.00[AMR][1000 genomes]
rs9655342	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021650	chr7:3665232-4577439	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1029406	chr7:3860894-4477095	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv538685	chr7:3860894-4477095	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1026410	chr7:3869104-4383606	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1025497	chr7:3905444-4176032	Enhancers Strong transcription ZNF genes & repeats Genic enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv538686	chr7:3905444-4176032	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv464274	chr7:3955516-4613607	Weak transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv464275	chr7:3955516-4613607	Enhancers Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv464276	chr7:3955516-4613607	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv464277	chr7:3955516-4613607	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv464278	chr7:3955516-4613607	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv605939	chr7:3955516-4613607	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv1019305	chr7:3991646-4276004	Enhancers Weak transcription Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv1033687	chr7:4006020-4267871	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv538688	chr7:4006020-4267871	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv917252	chr7:4017819-4374090	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv527624	chr7:4027536-4424054	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv523815	chr7:4054773-4088876	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv887338	chr7:4054773-4105705	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:4022000-4057800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr7:4031200-4058400	Weak transcription	Gastric	stomach
3	chr7:4047000-4056800	Weak transcription	Fetal Intestine Large	intestine
4	chr7:4047000-4058400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr7:4047200-4057600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr7:4047600-4058200	Weak transcription	Esophagus	oesophagus
7	chr7:4049000-4058400	Weak transcription	Colon Smooth Muscle	Colon
8	chr7:4050000-4058600	Weak transcription	Right Ventricle	heart
9	chr7:4050000-4059200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr7:4051200-4065600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:4051600-4058000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr7:4052000-4058200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr7:4052000-4061000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr7:4053000-4058200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr7:4053200-4058200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr7:4053400-4057800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr7:4053800-4056400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr7:4053800-4056800	Weak transcription	Fetal Muscle Trunk	muscle
19	chr7:4053800-4065800	Weak transcription	Fetal Brain Male	brain
20	chr7:4054200-4057200	Strong transcription	Aorta	Aorta
21	chr7:4054200-4065400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr7:4054600-4056800	Strong transcription	Primary neutrophils fromperipheralblood	blood
23	chr7:4054600-4056800	Weak transcription	Fetal Muscle Leg	muscle
24	chr7:4054600-4058400	Weak transcription	Fetal Lung	lung
25	chr7:4055000-4056800	Weak transcription	Lung	lung
26	chr7:4055400-4058400	Weak transcription	Spleen	Spleen
27	chr7:4055400-4058600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr7:4055600-4057200	Strong transcription	Muscle Satellite Cultured Cells	--
29	chr7:4055600-4057400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr7:4056000-4056800	Weak transcription	Fetal Stomach	stomach
31	chr7:4056000-4058400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr7:4056000-4058400	Weak transcription	Fetal Intestine Small	intestine
33	chr7:4056000-4058400	Weak transcription	Pancreas	Pancrea
34	chr7:4056200-4056600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr7:4056200-4056800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr7:4056200-4060000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain

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