Variant report

Variant	rs10265282
Chromosome Location	chr7:100886243-100886244
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:100859400..100864017-chr7:100886115..100890578,15	K562	blood:
2	chr7:100858478..100862757-chr7:100884994..100890276,15	MCF-7	breast:
3	chr7:100863090..100866963-chr7:100885534..100889185,4	MCF-7	breast:
4	chr7:100864237..100866284-chr7:100885658..100887692,2	K562	blood:
5	chr7:100859374..100863045-chr7:100885733..100890781,8	K562	blood:
6	chr7:100491924..100495059-chr7:100886100..100889819,5	MCF-7	breast:
7	chr7:100883935..100886693-chr7:100893948..100895706,3	K562	blood:
8	chr7:100859513..100863025-chr7:100885730..100890155,10	MCF-7	breast:
9	chr7:100491227..100493354-chr7:100886184..100889152,2	K562	blood:
10	chr11:10829274..10832043-chr7:100885049..100888031,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000087085	Chromatin interaction
ENSG00000246308	Chromatin interaction
ENSG00000110321	Chromatin interaction
ENSG00000106397	Chromatin interaction
ENSG00000214253	Chromatin interaction
ENSG00000106400	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10215517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10271895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10279323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2227700	1.00[AMR][1000 genomes]
rs28429010	0.86[AFR][1000 genomes]
rs56037105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56115622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56134317	1.00[AMR][1000 genomes]
rs56908565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56947489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57225690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58061448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58680639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59337995	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59928515	1.00[AMR][1000 genomes]
rs73713814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831075	chr7:100692297-100917018	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1030604	chr7:100717732-101223465	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	esv2422376	chr7:100743485-101016471	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
5	nsv534186	chr7:100773842-100898909	Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
6	nsv464651	chr7:100792810-100971604	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
7	nsv607974	chr7:100792810-100971604	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	nsv429788	chr7:100799565-101178565	Weak transcription Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
9	esv2752134	chr7:100800131-101141867	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
10	nsv831076	chr7:100828847-101011674	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
11	nsv888818	chr7:100833153-100895480	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
12	nsv888819	chr7:100833153-100920007	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
13	esv2422326	chr7:100833449-101000131	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
14	nsv607978	chr7:100861213-100971604	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
15	nsv831077	chr7:100874209-101083930	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:100862400-100887000	Weak transcription	Fetal Kidney	kidney
2	chr7:100863800-100886800	Weak transcription	Psoas Muscle	Psoas
3	chr7:100863800-100886800	Weak transcription	Hela-S3	cervix
4	chr7:100868400-100887600	Weak transcription	Small Intestine	intestine
5	chr7:100876000-100887000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:100876400-100887000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr7:100876800-100886800	Weak transcription	Fetal Brain Male	brain
8	chr7:100880800-100887000	Genic enhancers	Placenta	Placenta
9	chr7:100882200-100886800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:100882400-100886800	Weak transcription	Fetal Lung	lung
11	chr7:100882800-100887000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr7:100883000-100886800	Weak transcription	Fetal Heart	heart
13	chr7:100883000-100887000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr7:100883200-100886600	Weak transcription	Right Atrium	heart
15	chr7:100883200-100887200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr7:100883400-100886400	Weak transcription	HUVEC	blood vessel
17	chr7:100883400-100886800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr7:100883400-100886800	Strong transcription	Fetal Stomach	stomach
19	chr7:100884000-100886800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr7:100884000-100887000	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr7:100884000-100887000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr7:100884200-100886400	Weak transcription	A549	lung
23	chr7:100884200-100886800	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr7:100884200-100887000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr7:100884200-100887000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr7:100884200-100887000	Weak transcription	Gastric	stomach
27	chr7:100884400-100886400	Weak transcription	Brain Angular Gyrus	brain
28	chr7:100884400-100886400	Weak transcription	Colon Smooth Muscle	Colon
29	chr7:100884400-100886400	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr7:100884400-100886400	Weak transcription	Right Ventricle	heart
31	chr7:100884400-100886400	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr7:100884400-100886400	Weak transcription	HepG2	liver
33	chr7:100884400-100886600	Weak transcription	Fetal Muscle Trunk	muscle
34	chr7:100884400-100886800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr7:100884400-100886800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr7:100884400-100886800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr7:100884400-100886800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr7:100884400-100886800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr7:100884400-100886800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr7:100884400-100886800	Weak transcription	Colonic Mucosa	Colon
41	chr7:100884400-100886800	Weak transcription	Fetal Brain Female	brain
42	chr7:100884400-100886800	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr7:100884400-100886800	Weak transcription	Rectal Smooth Muscle	rectum
44	chr7:100884400-100886800	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr7:100884400-100886800	Weak transcription	Stomach Mucosa	stomach
46	chr7:100884400-100886800	Weak transcription	NHLF	lung
47	chr7:100884400-100886800	Weak transcription	Osteobl	bone
48	chr7:100884400-100887000	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr7:100884400-100887000	Enhancers	Adipose Nuclei	Adipose
50	chr7:100884400-100887000	Weak transcription	Ovary	ovary

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