Variant report

Variant	rs56037105
Chromosome Location	chr7:100875200-100875201
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:100864826..100866353-chr7:100873456..100875578,2	MCF-7	breast:
2	chr7:100486768..100488287-chr7:100873847..100876838,2	MCF-7	breast:
3	chr7:100815776..100817566-chr7:100873478..100875821,2	K562	blood:
4	chr7:100868740..100871092-chr7:100874981..100876725,2	MCF-7	breast:
5	chr7:100803416..100808550-chr7:100874499..100877439,5	MCF-7	breast:
6	chr7:100797039..100799673-chr7:100874538..100877199,3	MCF-7	breast:
7	chr7:100867452..100869294-chr7:100872768..100875203,2	K562	blood:
8	chr7:100870582..100872520-chr7:100874188..100875884,3	MCF-7	breast:
9	chr7:100863732..100865673-chr7:100872305..100875910,3	K562	blood:
10	chr7:100859127..100862879-chr7:100873398..100878399,9	MCF-7	breast:
11	chr7:100804477..100806745-chr7:100874352..100876756,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000106367	Chromatin interaction
ENSG00000128564	Chromatin interaction
ENSG00000106397	Chromatin interaction
ENSG00000176125	Chromatin interaction
ENSG00000106400	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10215517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10265282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10271895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10279323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2227700	1.00[AMR][1000 genomes]
rs28429010	0.86[AFR][1000 genomes]
rs56115622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56134317	1.00[AMR][1000 genomes]
rs56908565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56947489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57225690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58061448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58680639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59337995	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59928515	1.00[AMR][1000 genomes]
rs73713814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831075	chr7:100692297-100917018	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1030604	chr7:100717732-101223465	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	esv2422376	chr7:100743485-101016471	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
5	nsv534186	chr7:100773842-100898909	Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
6	nsv464651	chr7:100792810-100971604	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
7	nsv607974	chr7:100792810-100971604	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	nsv429788	chr7:100799565-101178565	Weak transcription Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
9	esv2752134	chr7:100800131-101141867	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
10	nsv464652	chr7:100804140-100881640	Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
11	nsv607976	chr7:100804140-100881640	Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
12	nsv888817	chr7:100804140-100881640	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
13	nsv607977	chr7:100818846-100881640	Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
14	nsv831076	chr7:100828847-101011674	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
15	nsv888818	chr7:100833153-100895480	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
16	nsv888819	chr7:100833153-100920007	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
17	esv2422326	chr7:100833449-101000131	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
18	nsv607978	chr7:100861213-100971604	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
19	nsv831077	chr7:100874209-101083930	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:156 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:100862200-100875200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:100862400-100875400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:100862400-100887000	Weak transcription	Fetal Kidney	kidney
4	chr7:100862800-100875400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:100863800-100875600	Weak transcription	Right Atrium	heart
6	chr7:100863800-100884000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr7:100863800-100886800	Weak transcription	Psoas Muscle	Psoas
8	chr7:100863800-100886800	Weak transcription	Hela-S3	cervix
9	chr7:100865000-100875800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr7:100865000-100884800	Strong transcription	Thymus	Thymus
11	chr7:100867600-100880400	Weak transcription	Aorta	Aorta
12	chr7:100868400-100887600	Weak transcription	Small Intestine	intestine
13	chr7:100868800-100875200	Weak transcription	NH-A	brain
14	chr7:100868800-100875200	Weak transcription	NHDF-Ad	bronchial
15	chr7:100868800-100880400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr7:100868800-100880600	Weak transcription	GM12878-XiMat	blood
17	chr7:100868800-100881600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr7:100868800-100884200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr7:100869000-100879200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr7:100869200-100875200	Weak transcription	Colon Smooth Muscle	Colon
21	chr7:100869200-100879800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr7:100869200-100881600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr7:100869600-100875200	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr7:100869600-100878800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr7:100871000-100876600	Weak transcription	Fetal Brain Male	brain
26	chr7:100871000-100880600	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr7:100871000-100880600	Weak transcription	Brain Substantia Nigra	brain
28	chr7:100871200-100880200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr7:100871800-100878600	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr7:100871800-100879800	Weak transcription	Brain Cingulate Gyrus	brain
31	chr7:100872000-100875200	Weak transcription	Rectal Smooth Muscle	rectum
32	chr7:100872000-100875400	Weak transcription	Brain Angular Gyrus	brain
33	chr7:100872000-100880600	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr7:100872000-100880600	Weak transcription	HSMM	muscle
35	chr7:100872200-100875600	Weak transcription	Brain Anterior Caudate	brain
36	chr7:100872200-100880600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr7:100872200-100880600	Weak transcription	HSMMtube	muscle
38	chr7:100872200-100881800	Weak transcription	Primary B cells from cord blood	blood
39	chr7:100872400-100876000	Enhancers	Liver	Liver
40	chr7:100872600-100875400	Weak transcription	Ovary	ovary
41	chr7:100872600-100878400	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr7:100872600-100879200	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr7:100872600-100879600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr7:100872600-100879800	Weak transcription	Dnd41	blood
45	chr7:100872800-100880200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr7:100872800-100880200	Weak transcription	Osteobl	bone
47	chr7:100872800-100880800	Weak transcription	Primary B cells from peripheral blood	blood
48	chr7:100873000-100875600	Weak transcription	Fetal Brain Female	brain
49	chr7:100873400-100875200	Weak transcription	Esophagus	oesophagus
50	chr7:100873400-100876200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links