Variant report

Variant	rs10266618
Chromosome Location	chr7:110690643-110690644
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:110684762..110686902-chr7:110689607..110691796,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10230261	0.90[AFR][1000 genomes]
rs10232461	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10232638	1.00[AMR][1000 genomes]
rs10232650	0.90[AFR][1000 genomes]
rs10232898	0.90[AFR][1000 genomes]
rs10233434	0.90[AFR][1000 genomes]
rs10234323	1.00[AMR][1000 genomes]
rs10234494	1.00[AFR][1000 genomes]
rs10235471	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10238903	0.90[AFR][1000 genomes]
rs10239308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10239982	1.00[AMR][1000 genomes]
rs10240323	1.00[AFR][1000 genomes]
rs10241296	0.90[AFR][1000 genomes]
rs10242243	1.00[AMR][1000 genomes]
rs10247851	1.00[AMR][1000 genomes]
rs10248659	0.90[AFR][1000 genomes]
rs10248904	0.90[AFR][1000 genomes]
rs10251218	1.00[AMR][1000 genomes]
rs10253322	0.90[AFR][1000 genomes]
rs10253600	0.90[AFR][1000 genomes]
rs10254522	0.90[AFR][1000 genomes]
rs10260878	0.90[AFR][1000 genomes]
rs10263280	1.00[AMR][1000 genomes]
rs10266806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10267717	0.90[AFR][1000 genomes]
rs10270126	0.90[AFR][1000 genomes]
rs10278402	0.90[AFR][1000 genomes]
rs10278436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10279604	1.00[AMR][1000 genomes]
rs10280002	0.90[AFR][1000 genomes]
rs13438044	1.00[AMR][1000 genomes]
rs28406651	1.00[AFR][1000 genomes]
rs28415597	1.00[AMR][1000 genomes]
rs28535164	1.00[AMR][1000 genomes]
rs28570414	0.90[AFR][1000 genomes]
rs28624586	0.90[AFR][1000 genomes]
rs28627674	0.90[AFR][1000 genomes]
rs28691789	0.90[AFR][1000 genomes]
rs6968936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7789870	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023596	chr7:109984459-110708071	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539061	chr7:109984459-110708071	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv531434	chr7:110310931-110839892	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv3506497	chr7:110484691-111091738	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv3506498	chr7:110484750-111091689	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv888973	chr7:110509579-110699652	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv2758129	chr7:110523298-110787849	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv2759554	chr7:110523298-110787849	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1031546	chr7:110549137-110978256	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv817555	chr7:110564801-110990927	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv1033286	chr7:110588021-110990928	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv539063	chr7:110588021-110990928	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv931978	chr7:110607590-111092490	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
14	nsv1025987	chr7:110609568-111258501	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
15	esv2830178	chr7:110645431-110778571	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv1024477	chr7:110660006-110944477	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv608154	chr7:110688993-110945501	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:110682000-110692600	Weak transcription	Primary T cells from cord blood	blood
2	chr7:110685800-110691800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:110685800-110693200	Weak transcription	Ovary	ovary
4	chr7:110686000-110695400	Weak transcription	Aorta	Aorta
5	chr7:110689600-110691200	Enhancers	Fetal Lung	lung
6	chr7:110689600-110691400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr7:110689600-110691600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr7:110689600-110692800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr7:110689600-110693800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr7:110689800-110690800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr7:110689800-110691200	Enhancers	H1 Cell Line	embryonic stem cell
12	chr7:110689800-110691400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:110689800-110691600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:110689800-110691800	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr7:110689800-110692400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:110689800-110693000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr7:110689800-110693000	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr7:110690000-110690800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr7:110690000-110693600	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr7:110690200-110692600	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr7:110690400-110690800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr7:110690400-110691400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr7:110690600-110690800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
24	chr7:110690600-110691400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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