Variant report

Variant	rs10280002
Chromosome Location	chr7:110569129-110569130
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:110566336..110568071-chr7:110568673..110570980,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10230261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10232650	1.00[AFR][1000 genomes]
rs10232898	1.00[AFR][1000 genomes]
rs10233434	1.00[AFR][1000 genomes]
rs10234494	0.90[AFR][1000 genomes]
rs10235471	0.90[AFR][1000 genomes]
rs10238272	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10238903	1.00[AFR][1000 genomes]
rs10239308	0.90[AFR][1000 genomes]
rs10240323	0.90[AFR][1000 genomes]
rs10241296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10248659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10248904	1.00[AFR][1000 genomes]
rs10253322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10253542	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10253600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10254522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10260878	1.00[AFR][1000 genomes]
rs10266618	0.90[AFR][1000 genomes]
rs10266806	0.90[AFR][1000 genomes]
rs10267717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10270126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10278402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10278436	0.90[AFR][1000 genomes]
rs28406651	0.90[AFR][1000 genomes]
rs28570414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28624586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28626819	0.83[AFR][1000 genomes]
rs28627674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28691789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6968936	0.90[AFR][1000 genomes]
rs7789870	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023596	chr7:109984459-110708071	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539061	chr7:109984459-110708071	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv608147	chr7:110292046-110617845	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv531434	chr7:110310931-110839892	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv888972	chr7:110470629-110635497	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3506497	chr7:110484691-111091738	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	esv3506498	chr7:110484750-111091689	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1019911	chr7:110505973-110570241	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv888973	chr7:110509579-110699652	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv888974	chr7:110516659-110660055	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	esv2758129	chr7:110523298-110787849	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	esv2759554	chr7:110523298-110787849	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv1031546	chr7:110549137-110978256	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	nsv817555	chr7:110564801-110990927	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:110561800-110588800	Weak transcription	Left Ventricle	heart
2	chr7:110567600-110569200	Enhancers	Primary T cells from cord blood	blood
3	chr7:110567600-110614400	Weak transcription	Psoas Muscle	Psoas
4	chr7:110568800-110569400	Enhancers	Fetal Intestine Small	intestine
5	chr7:110568800-110579800	Weak transcription	Fetal Heart	heart
6	chr7:110569000-110569400	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr7:110569000-110570000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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