Variant report

Variant	rs10266716
Chromosome Location	chr7:6408094-6408095
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:6407358..6411182-chr7:6412675..6416929,4	K562	blood:

Variant related genes	Relation type
ENSG00000136238	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10261256	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10951982	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11514801	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11514802	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11514804	0.83[ASN][1000 genomes]
rs11763354	0.84[ASN][1000 genomes]
rs17196595	0.83[ASN][1000 genomes]
rs2347339	0.84[ASN][1000 genomes]
rs33986648	0.84[ASN][1000 genomes]
rs33999234	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34106847	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34414425	0.82[ASN][1000 genomes]
rs34884077	0.84[ASN][1000 genomes]
rs35733871	0.84[ASN][1000 genomes]
rs3729790	0.83[ASN][1000 genomes]
rs4720669	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4724800	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4724801	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71531381	0.81[ASN][1000 genomes]
rs71531384	0.83[ASN][1000 genomes]
rs7455288	0.83[ASN][1000 genomes]
rs7456834	0.83[ASN][1000 genomes]
rs9648592	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948912	chr7:5803903-6623553	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
2	nsv1034060	chr7:5814823-6745710	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
3	nsv538711	chr7:5814823-6745710	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
4	nsv1028242	chr7:5819084-6645024	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	127 gene(s)	inside rSNPs	diseases
5	nsv538712	chr7:5819084-6645024	Weak transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	127 gene(s)	inside rSNPs	diseases
6	nsv949531	chr7:5949371-6753694	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
7	nsv1021037	chr7:6070792-6426966	Strong transcription Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
8	nsv538713	chr7:6070792-6426966	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
9	nsv530989	chr7:6176729-6438197	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
10	nsv1020236	chr7:6248930-6690377	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
11	nsv497874	chr7:6296768-6614902	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
12	nsv1025381	chr7:6356704-6409818	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
13	nsv605999	chr7:6396719-6472881	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
14	nsv966752	chr7:6403674-6408528	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	esv3436197	chr7:6404027-6408225	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10266716	DAGLB	cis	Adipose Subcutaneous	GTEx
rs10266716	DAGLB	cis	Nerve Tibial	GTEx
rs10266716	DAGLB	cis	Skin Sun Exposed Lower leg	GTEx
rs10266716	DAGLB	cis	Whole Blood	GTEx

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:6388800-6409400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:6406400-6408200	Enhancers	Colonic Mucosa	Colon
3	chr7:6406400-6408200	Enhancers	Fetal Intestine Large	intestine
4	chr7:6406400-6408200	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr7:6406800-6408200	Enhancers	Rectal Mucosa Donor 29	rectum
6	chr7:6406800-6408400	Enhancers	Fetal Intestine Small	intestine
7	chr7:6407000-6408200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr7:6407200-6408200	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr7:6407200-6408200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr7:6407200-6408200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr7:6407200-6408200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr7:6407200-6408200	Enhancers	Placenta	Placenta
13	chr7:6407400-6408200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr7:6407400-6408200	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr7:6407600-6408200	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr7:6407600-6412800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr7:6407800-6408200	Enhancers	K562	blood
18	chr7:6407800-6413600	Weak transcription	HUVEC	blood vessel
19	chr7:6408000-6408400	Enhancers	Hela-S3	cervix
20	chr7:6408000-6412200	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr7:6408000-6412600	Weak transcription	Duodenum Mucosa	Duodenum
22	chr7:6408000-6412600	Weak transcription	GM12878-XiMat	blood
23	chr7:6408000-6413400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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