Variant report

Variant	rs10268160
Chromosome Location	chr7:19184059-19184060
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10228726	0.90[JPT][hapmap]
rs10235442	0.82[AFR][1000 genomes]
rs10254337	0.91[JPT][hapmap]
rs10275272	0.83[CEU][hapmap]
rs2189000	0.84[CEU][hapmap]
rs2285681	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531020	chr7:18971153-19261019	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv532096	chr7:19094324-19361216	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv532097	chr7:19105767-19302951	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1022118	chr7:19178075-19518160	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19183000-19185000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
2	chr7:19183000-19185000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr7:19183000-19185000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
4	chr7:19183000-19185400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
5	chr7:19183200-19185000	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:19183200-19185000	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:19183200-19185000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr7:19183200-19185000	Enhancers	Pancreas	Pancrea
9	chr7:19183200-19185200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
10	chr7:19183200-19185200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
11	chr7:19183200-19185600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr7:19183400-19184400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr7:19183400-19184400	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr7:19183400-19184400	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr7:19183400-19184800	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr7:19183400-19184800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
17	chr7:19183400-19184800	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr7:19183400-19185000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr7:19183400-19185000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
20	chr7:19183400-19185400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
21	chr7:19183400-19185600	Bivalent Enhancer	Fetal Brain Male	brain
22	chr7:19183600-19184400	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
23	chr7:19183600-19184400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr7:19183600-19184400	Bivalent Enhancer	Psoas Muscle	Psoas
25	chr7:19183600-19184400	Active TSS	Osteobl	bone
26	chr7:19183600-19184600	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr7:19183600-19184600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr7:19183600-19184600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
29	chr7:19183600-19184600	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
30	chr7:19183600-19184800	Bivalent Enhancer	Fetal Muscle Leg	muscle
31	chr7:19183600-19184800	Bivalent/Poised TSS	NHDF-Ad	bronchial
32	chr7:19183600-19185000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
33	chr7:19183600-19185600	ZNF genes & repeats	Spleen	Spleen
34	chr7:19183800-19184200	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr7:19183800-19184200	Active TSS	Right Atrium	heart
36	chr7:19183800-19184200	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
37	chr7:19183800-19184400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
38	chr7:19183800-19184400	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr7:19183800-19184400	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
40	chr7:19183800-19184600	Active TSS	Right Ventricle	heart
41	chr7:19183800-19185000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
42	chr7:19183800-19185000	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr7:19183800-19185000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
44	chr7:19183800-19185600	Bivalent/Poised TSS	Brain Anterior Caudate	brain
45	chr7:19183800-19185600	Bivalent/Poised TSS	Fetal Brain Female	brain
46	chr7:19184000-19184200	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
47	chr7:19184000-19184200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr7:19184000-19184200	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr7:19184000-19184200	Bivalent Enhancer	Brain Germinal Matrix	brain
50	chr7:19184000-19184200	Bivalent Enhancer	Stomach Smooth Muscle	stomach

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