Variant report

Variant	rs10268180
Chromosome Location	chr7:19019671-19019672
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10256595	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10281656	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10282136	0.83[MEX][hapmap]
rs10486329	0.83[CHB][hapmap];0.80[JPT][hapmap];0.84[LWK][hapmap];0.87[MEX][hapmap];0.81[AMR][1000 genomes]
rs10486330	0.93[ASW][hapmap];0.83[CHB][hapmap];0.80[JPT][hapmap];0.96[LWK][hapmap];0.87[MEX][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11505418	0.83[CHB][hapmap];0.80[JPT][hapmap];0.83[MEX][hapmap]
rs12056180	0.82[ASN][1000 genomes]
rs12539764	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17435702	0.83[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs6968777	0.91[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6976460	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9886098	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531020	chr7:18971153-19261019	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1032870	chr7:18982862-19021763	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv538765	chr7:18982862-19021763	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10268180	CCR8	trans	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18991400-19025000	Weak transcription	Primary B cells from cord blood	blood
2	chr7:19013800-19040800	Weak transcription	Aorta	Aorta
3	chr7:19015600-19020600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr7:19015800-19042400	Weak transcription	Left Ventricle	heart
5	chr7:19017400-19026000	Weak transcription	HSMMtube	muscle
6	chr7:19017600-19022600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr7:19017600-19029800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr7:19017800-19029800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr7:19018600-19021800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:19018800-19033600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr7:19019000-19020800	Weak transcription	Psoas Muscle	Psoas
12	chr7:19019000-19022600	Weak transcription	NHDF-Ad	bronchial
13	chr7:19019400-19034600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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