Variant report

Variant	rs9886098
Chromosome Location	chr7:19016831-19016832
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:19014156..19016996-chr7:19021800..19024663,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10256595	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10268180	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10281656	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10282136	0.88[CHB][hapmap];0.91[YRI][hapmap]
rs10486329	0.94[CHB][hapmap]
rs10486330	0.94[CHB][hapmap]
rs11505418	0.94[CHB][hapmap]
rs12056180	0.81[ASN][1000 genomes]
rs12539764	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17435702	0.84[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2965027	0.84[ASN][1000 genomes]
rs4413678	0.82[YRI][hapmap]
rs6968777	0.96[CEU][hapmap];0.93[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6976460	0.92[CEU][hapmap];0.88[CHB][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531020	chr7:18971153-19261019	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1032870	chr7:18982862-19021763	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv538765	chr7:18982862-19021763	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18991400-19025000	Weak transcription	Primary B cells from cord blood	blood
2	chr7:19000800-19017600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:19011600-19018600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:19011600-19018800	Enhancers	HMEC	breast
5	chr7:19011600-19018800	Enhancers	NHEK	skin
6	chr7:19012000-19018600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:19012200-19018600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr7:19013800-19040800	Weak transcription	Aorta	Aorta
9	chr7:19014000-19017000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr7:19014000-19017200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr7:19014400-19017200	Enhancers	NHDF-Ad	bronchial
12	chr7:19014800-19017200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr7:19014800-19017200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr7:19015600-19020600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr7:19015800-19042400	Weak transcription	Left Ventricle	heart
16	chr7:19016000-19017600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr7:19016200-19017000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:19016200-19017000	Enhancers	NHLF	lung
19	chr7:19016400-19017200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr7:19016400-19017200	Enhancers	NH-A	brain
21	chr7:19016400-19018200	Enhancers	Fetal Stomach	stomach
22	chr7:19016400-19018600	Enhancers	HSMM	muscle
23	chr7:19016400-19018600	Enhancers	HUVEC	blood vessel
24	chr7:19016600-19017000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr7:19016600-19017200	Enhancers	Osteobl	bone
26	chr7:19016800-19017200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr7:19016800-19017400	Enhancers	Adipose Nuclei	Adipose
28	chr7:19016800-19017600	Enhancers	Stomach Smooth Muscle	stomach
29	chr7:19016800-19017800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr7:19016800-19018600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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