Variant report

Variant	rs10269177
Chromosome Location	chr7:110800372-110800373
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:110790879..110793527-chr7:110798511..110801255,3	K562	blood:
2	chr7:110799581..110802084-chr7:110811577..110813562,2	K562	blood:

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1014269	1.00[CEU][hapmap];0.80[YRI][hapmap];0.87[EUR][1000 genomes]
rs1014270	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs1014271	1.00[CEU][hapmap];0.80[YRI][hapmap];0.87[EUR][1000 genomes]
rs10237613	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs10241771	1.00[CEU][hapmap];0.89[YRI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10257531	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10257931	0.94[YRI][hapmap];0.84[AFR][1000 genomes]
rs12705758	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13238719	0.87[EUR][1000 genomes]
rs214841	1.00[CEU][hapmap];0.80[YRI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs214842	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs214844	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs214845	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs214846	1.00[CEU][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs214847	0.92[EUR][1000 genomes]
rs214848	0.89[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs214849	0.96[EUR][1000 genomes]
rs214850	0.96[EUR][1000 genomes]
rs214851	0.96[EUR][1000 genomes]
rs214853	1.00[CEU][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs214854	0.96[EUR][1000 genomes]
rs214855	1.00[CEU][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs214856	1.00[CEU][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs214857	1.00[CEU][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs214858	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs214859	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs214860	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs214861	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs214862	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs214863	1.00[CEU][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs214864	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs214865	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs214866	0.96[EUR][1000 genomes]
rs214867	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs214868	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs214869	1.00[CEU][hapmap];0.88[YRI][hapmap];0.96[EUR][1000 genomes]
rs214870	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs214871	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs214872	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs214873	0.96[EUR][1000 genomes]
rs214874	0.96[EUR][1000 genomes]
rs214877	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs214878	1.00[CEU][hapmap];0.85[YRI][hapmap];0.96[EUR][1000 genomes]
rs214879	0.96[EUR][1000 genomes]
rs214880	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs214881	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs214882	0.96[EUR][1000 genomes]
rs214886	0.96[EUR][1000 genomes]
rs214887	1.00[CEU][hapmap];0.80[YRI][hapmap];0.96[EUR][1000 genomes]
rs214894	0.91[EUR][1000 genomes]
rs2160024	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs28590134	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs37745	1.00[CEU][hapmap]
rs4236594	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs4730474	0.87[EUR][1000 genomes]
rs57817514	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57971786	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58799975	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59902560	0.87[EUR][1000 genomes]
rs60913915	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6945175	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7783424	1.00[CEU][hapmap];0.83[YRI][hapmap];0.91[EUR][1000 genomes]
rs7790427	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7801960	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs7802954	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7808895	0.87[EUR][1000 genomes]
rs996597	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531434	chr7:110310931-110839892	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3506497	chr7:110484691-111091738	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3506498	chr7:110484750-111091689	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1031546	chr7:110549137-110978256	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv817555	chr7:110564801-110990927	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1033286	chr7:110588021-110990928	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv539063	chr7:110588021-110990928	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv931978	chr7:110607590-111092490	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv1025987	chr7:110609568-111258501	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
10	nsv1024477	chr7:110660006-110944477	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv608154	chr7:110688993-110945501	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv608155	chr7:110722482-111351512	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
13	nsv1035119	chr7:110745019-111258501	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
14	nsv1033647	chr7:110766750-110923436	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv1016762	chr7:110769068-110883479	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv1029168	chr7:110771561-110818458	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv888976	chr7:110773099-110959881	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv464674	chr7:110776037-110861883	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv608156	chr7:110776037-110861883	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv1029100	chr7:110782696-110899748	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv1025697	chr7:110782696-110901586	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
22	nsv1022943	chr7:110786548-111092491	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
23	nsv539064	chr7:110786548-111092491	Genic enhancers Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
24	esv2752141	chr7:110787970-111113591	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
25	nsv888977	chr7:110798059-111108260	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:110799000-110803000	Enhancers	Muscle Satellite Cultured Cells	--
2	chr7:110799400-110800600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr7:110799400-110800600	Enhancers	NHDF-Ad	bronchial
4	chr7:110799600-110804400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr7:110800200-110801200	Weak transcription	Osteobl	bone

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