Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:98464788..98468535-chr7:98474247..98476816,4	MCF-7	breast:
2	chr7:98474512..98479039-chr7:98480713..98484899,10	K562	blood:

Variant related genes	Relation type
ENSG00000238459	Chromatin interaction
ENSG00000166448	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10081297	1.00[MEX][hapmap]
rs10255856	1.00[MEX][hapmap]
rs10260884	0.87[LWK][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10279813	0.87[AMR][1000 genomes]
rs11768515	0.85[AFR][1000 genomes]
rs11771770	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs122152	1.00[TSI][hapmap]
rs160388	0.82[AFR][1000 genomes]
rs160391	0.82[AFR][1000 genomes]
rs1709724	0.84[LWK][hapmap]
rs17161491	0.88[ASW][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs219801	0.91[LWK][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap]
rs219810	0.84[MKK][hapmap];1.00[TSI][hapmap]
rs219811	0.82[MKK][hapmap];1.00[TSI][hapmap]
rs28502461	0.93[AMR][1000 genomes]
rs28525333	0.87[AMR][1000 genomes]
rs310742	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs310744	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6949344	0.81[AFR][1000 genomes]
rs73395129	0.85[AFR][1000 genomes]
rs73407188	0.83[AFR][1000 genomes]
rs7457148	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98468200-98475600	Weak transcription	Right Atrium	heart
2	chr7:98468400-98475400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:98469000-98475200	Weak transcription	Spleen	Spleen
4	chr7:98469000-98475400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:98469000-98475600	Weak transcription	A549	lung
6	chr7:98472800-98475400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr7:98473400-98475400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr7:98473800-98475400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr7:98474200-98475400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr7:98474400-98475200	Bivalent Enhancer	HepG2	liver
11	chr7:98474400-98475400	Active TSS	Primary T helper cells fromperipheralblood	blood

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