Variant report

Variant	rs28502461
Chromosome Location	chr7:98471553-98471554
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10267068	1.00[EUR][1000 genomes]
rs10269427	0.93[AMR][1000 genomes]
rs10275844	1.00[EUR][1000 genomes]
rs10279813	0.81[AMR][1000 genomes]
rs11771770	0.88[AMR][1000 genomes]
rs17161491	0.87[AMR][1000 genomes]
rs17161567	1.00[EUR][1000 genomes]
rs2138087	1.00[EUR][1000 genomes]
rs28525333	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28556608	1.00[EUR][1000 genomes]
rs58666420	1.00[EUR][1000 genomes]
rs6949335	1.00[EUR][1000 genomes]
rs6963517	1.00[EUR][1000 genomes]
rs73404949	1.00[EUR][1000 genomes]
rs73407182	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98468200-98475600	Weak transcription	Right Atrium	heart
2	chr7:98468400-98475400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:98469000-98475200	Weak transcription	Spleen	Spleen
4	chr7:98469000-98475400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:98469000-98475600	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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