Variant report

Variant	rs10267068
Chromosome Location	chr7:98640202-98640203
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:98634444..98641048-chr7:98738187..98742525,9	MCF-7	breast:
2	chr7:98638079..98641022-chr7:98641303..98643730,2	K562	blood:
3	chr7:98639722..98641343-chr7:98991316..98993265,2	K562	blood:
4	chr7:98638555..98640231-chr7:98647468..98649244,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000242687	Chromatin interaction
ENSG00000198742	Chromatin interaction
ENSG00000130429	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10235956	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs10275844	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10279813	0.93[AMR][1000 genomes]
rs11977121	1.00[EUR][1000 genomes]
rs160391	0.93[AMR][1000 genomes]
rs1709724	0.87[AMR][1000 genomes]
rs1709725	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1709727	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17161567	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2138087	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs219794	0.86[AMR][1000 genomes]
rs219801	0.82[AFR][1000 genomes]
rs219809	0.86[AMR][1000 genomes]
rs28502461	1.00[EUR][1000 genomes]
rs28525333	1.00[EUR][1000 genomes]
rs28556608	1.00[EUR][1000 genomes]
rs310742	0.87[AMR][1000 genomes]
rs310744	0.87[AMR][1000 genomes]
rs4413705	0.86[AMR][1000 genomes]
rs58666420	1.00[EUR][1000 genomes]
rs6949335	1.00[EUR][1000 genomes]
rs6963517	1.00[EUR][1000 genomes]
rs73404949	1.00[EUR][1000 genomes]
rs73407182	1.00[EUR][1000 genomes]
rs7788342	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv1847495	chr7:98556216-98648069	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv1034506	chr7:98556216-98678440	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98583800-98648800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:98624800-98644200	Strong transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:98624800-98651200	Strong transcription	Primary hematopoietic stem cells	blood
4	chr7:98624800-98653000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr7:98624800-98655200	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:98624800-98656600	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr7:98624800-98656600	Strong transcription	Dnd41	blood
8	chr7:98624800-98657800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr7:98624800-98658400	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr7:98625000-98655000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:98625000-98656400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr7:98625000-98656600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr7:98625000-98656600	Strong transcription	Fetal Thymus	thymus
14	chr7:98625200-98655200	Strong transcription	Primary B cells from peripheral blood	blood
15	chr7:98625200-98655400	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr7:98625200-98658800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr7:98625400-98642000	Strong transcription	Thymus	Thymus
18	chr7:98625400-98644200	Strong transcription	H1 Cell Line	embryonic stem cell
19	chr7:98625400-98655000	Strong transcription	Primary B cells from cord blood	blood
20	chr7:98625400-98655200	Strong transcription	Primary T cells from cord blood	blood
21	chr7:98625400-98655200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr7:98625400-98655200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr7:98625400-98655200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr7:98625400-98657800	Strong transcription	Primary T helper cells PMA-I stimulated	--
25	chr7:98625600-98640400	Strong transcription	Muscle Satellite Cultured Cells	--
26	chr7:98625600-98652400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr7:98625600-98652600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
28	chr7:98625600-98658800	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr7:98626000-98641800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr7:98626000-98656400	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr7:98626200-98656400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr7:98626600-98659200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr7:98626800-98641600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
34	chr7:98628000-98655200	Strong transcription	Brain Germinal Matrix	brain
35	chr7:98628000-98656400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr7:98628000-98658800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr7:98628200-98640600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr7:98628200-98650400	Strong transcription	Fetal Lung	lung
39	chr7:98628200-98651600	Strong transcription	HSMM	muscle
40	chr7:98628200-98652400	Strong transcription	Fetal Brain Female	brain
41	chr7:98628200-98655200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr7:98628200-98656400	Strong transcription	HSMMtube	muscle
43	chr7:98628200-98656600	Strong transcription	Left Ventricle	heart
44	chr7:98628400-98640400	Strong transcription	Cortex derived primary cultured neurospheres	brain
45	chr7:98628400-98641000	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr7:98628400-98651400	Weak transcription	Right Atrium	heart
47	chr7:98628400-98656600	Strong transcription	Lung	lung
48	chr7:98631000-98641600	Strong transcription	HMEC	breast
49	chr7:98634400-98643200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr7:98636400-98641000	Weak transcription	Duodenum Smooth Muscle	Duodenum

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