Variant report

Variant	rs4413705
Chromosome Location	chr7:98624000-98624001
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:98610114..98612044-chr7:98623356..98625969,2	K562	blood:
2	chr7:98621269..98624235-chr7:98626511..98629178,3	MCF-7	breast:
3	chr7:98616532..98618103-chr7:98623484..98625456,2	K562	blood:

Variant related genes	Relation type
ENSG00000242687	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10215494	1.00[EUR][1000 genomes]
rs10230563	1.00[EUR][1000 genomes]
rs10235956	0.93[AMR][1000 genomes]
rs10242106	1.00[EUR][1000 genomes]
rs10267068	0.86[AMR][1000 genomes]
rs10275844	0.93[AMR][1000 genomes]
rs11768515	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11769458	0.87[EUR][1000 genomes]
rs122152	1.00[EUR][1000 genomes]
rs160385	1.00[EUR][1000 genomes]
rs160386	1.00[EUR][1000 genomes]
rs160387	1.00[EUR][1000 genomes]
rs160388	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs160390	0.87[EUR][1000 genomes]
rs160391	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1709724	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1709725	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1709727	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17161491	1.00[EUR][1000 genomes]
rs17161567	0.86[AMR][1000 genomes]
rs2138087	0.93[AMR][1000 genomes]
rs219794	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs219796	0.87[EUR][1000 genomes]
rs219801	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs219802	1.00[EUR][1000 genomes]
rs219803	1.00[EUR][1000 genomes]
rs219804	1.00[EUR][1000 genomes]
rs219809	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs219810	1.00[EUR][1000 genomes]
rs219811	1.00[EUR][1000 genomes]
rs219812	1.00[EUR][1000 genomes]
rs219818	1.00[EUR][1000 genomes]
rs219830	1.00[EUR][1000 genomes]
rs219835	1.00[EUR][1000 genomes]
rs219836	1.00[EUR][1000 genomes]
rs219837	1.00[EUR][1000 genomes]
rs219840	1.00[EUR][1000 genomes]
rs310736	1.00[EUR][1000 genomes]
rs310738	0.87[EUR][1000 genomes]
rs310739	1.00[EUR][1000 genomes]
rs310741	1.00[EUR][1000 genomes]
rs310742	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs310743	0.89[EUR][1000 genomes]
rs310744	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60914761	0.87[EUR][1000 genomes]
rs60932686	1.00[EUR][1000 genomes]
rs61239201	1.00[EUR][1000 genomes]
rs6945370	1.00[EUR][1000 genomes]
rs6956697	1.00[EUR][1000 genomes]
rs6959321	1.00[EUR][1000 genomes]
rs6960312	1.00[EUR][1000 genomes]
rs6967096	1.00[EUR][1000 genomes]
rs73393198	0.87[EUR][1000 genomes]
rs73393201	0.87[EUR][1000 genomes]
rs73395129	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407188	1.00[EUR][1000 genomes]
rs73409107	1.00[EUR][1000 genomes]
rs73409108	0.87[EUR][1000 genomes]
rs7807059	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv1847495	chr7:98556216-98648069	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv1034506	chr7:98556216-98678440	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98583800-98648800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:98604200-98627000	Weak transcription	Fetal Heart	heart
3	chr7:98604800-98627000	Weak transcription	Fetal Brain Male	brain
4	chr7:98607200-98629200	Weak transcription	Psoas Muscle	Psoas
5	chr7:98610200-98625400	Weak transcription	Small Intestine	intestine
6	chr7:98612000-98627800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr7:98612400-98627800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:98612400-98632000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr7:98612600-98625200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr7:98612600-98627000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:98612800-98626400	Weak transcription	Brain Angular Gyrus	brain
12	chr7:98613400-98625400	Weak transcription	Esophagus	oesophagus
13	chr7:98613400-98626000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr7:98613400-98629400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr7:98613600-98624800	Weak transcription	HUVEC	blood vessel
16	chr7:98613600-98625400	Weak transcription	HepG2	liver
17	chr7:98613600-98625600	Weak transcription	Right Ventricle	heart
18	chr7:98613600-98626600	Weak transcription	Fetal Kidney	kidney
19	chr7:98614200-98625000	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr7:98614200-98625400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr7:98614200-98625800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr7:98614600-98625600	Weak transcription	GM12878-XiMat	blood
23	chr7:98617800-98625400	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr7:98618000-98625400	Weak transcription	Brain Germinal Matrix	brain
25	chr7:98618200-98624800	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr7:98618200-98624800	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr7:98618200-98624800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr7:98618200-98624800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr7:98618200-98625000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr7:98618200-98625000	Weak transcription	Fetal Lung	lung
31	chr7:98618200-98625000	Weak transcription	Fetal Muscle Leg	muscle
32	chr7:98618200-98625200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr7:98618200-98625200	Weak transcription	Fetal Stomach	stomach
34	chr7:98618200-98625400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr7:98618200-98625400	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr7:98618200-98625400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr7:98618200-98625400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr7:98618200-98625400	Weak transcription	Fetal Intestine Small	intestine
39	chr7:98618200-98625600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr7:98618200-98625600	Weak transcription	Ovary	ovary
41	chr7:98618200-98625600	Weak transcription	Rectal Smooth Muscle	rectum
42	chr7:98618200-98625800	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr7:98618200-98626000	Weak transcription	HMEC	breast
44	chr7:98618200-98626400	Weak transcription	Hela-S3	cervix
45	chr7:98618200-98626600	Weak transcription	K562	blood
46	chr7:98618200-98626800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr7:98618400-98624600	Weak transcription	Fetal Intestine Large	intestine
48	chr7:98618400-98624800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr7:98618400-98624800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr7:98618400-98624800	Weak transcription	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links