Variant report

Variant	rs17161567
Chromosome Location	chr7:98654147-98654148
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:98645663..98648207-chr7:98652569..98655109,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10235956	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs10267068	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10275844	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10279813	0.93[AMR][1000 genomes]
rs11977121	1.00[EUR][1000 genomes]
rs160391	0.93[AMR][1000 genomes]
rs1709724	0.87[AMR][1000 genomes]
rs1709725	0.87[AMR][1000 genomes]
rs1709727	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2138087	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs219794	0.86[AMR][1000 genomes]
rs219809	0.86[AMR][1000 genomes]
rs28502461	1.00[EUR][1000 genomes]
rs28525333	1.00[EUR][1000 genomes]
rs28556608	1.00[EUR][1000 genomes]
rs310742	0.87[AMR][1000 genomes]
rs310744	0.87[AMR][1000 genomes]
rs4413705	0.86[AMR][1000 genomes]
rs58666420	1.00[EUR][1000 genomes]
rs6949335	1.00[EUR][1000 genomes]
rs6963517	1.00[EUR][1000 genomes]
rs73407182	1.00[EUR][1000 genomes]
rs7788342	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv1034506	chr7:98556216-98678440	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98624800-98655200	Strong transcription	HUES48 Cell Line	embryonic stem cell
2	chr7:98624800-98656600	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr7:98624800-98656600	Strong transcription	Dnd41	blood
4	chr7:98624800-98657800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr7:98624800-98658400	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr7:98625000-98655000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:98625000-98656400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr7:98625000-98656600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr7:98625000-98656600	Strong transcription	Fetal Thymus	thymus
10	chr7:98625200-98655200	Strong transcription	Primary B cells from peripheral blood	blood
11	chr7:98625200-98655400	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr7:98625200-98658800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr7:98625400-98655000	Strong transcription	Primary B cells from cord blood	blood
14	chr7:98625400-98655200	Strong transcription	Primary T cells from cord blood	blood
15	chr7:98625400-98655200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr7:98625400-98655200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr7:98625400-98655200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr7:98625400-98657800	Strong transcription	Primary T helper cells PMA-I stimulated	--
19	chr7:98625600-98658800	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr7:98626000-98656400	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr7:98626200-98656400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr7:98626600-98659200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr7:98628000-98655200	Strong transcription	Brain Germinal Matrix	brain
24	chr7:98628000-98656400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr7:98628000-98658800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr7:98628200-98655200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr7:98628200-98656400	Strong transcription	HSMMtube	muscle
28	chr7:98628200-98656600	Strong transcription	Left Ventricle	heart
29	chr7:98628400-98656600	Strong transcription	Lung	lung
30	chr7:98638600-98655200	Strong transcription	Fetal Muscle Trunk	muscle
31	chr7:98638600-98655600	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr7:98638600-98656400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr7:98638600-98656600	Strong transcription	Fetal Muscle Leg	muscle
34	chr7:98638600-98656600	Strong transcription	Placenta	Placenta
35	chr7:98638600-98658400	Strong transcription	Adipose Nuclei	Adipose
36	chr7:98638600-98658400	Strong transcription	Fetal Stomach	stomach
37	chr7:98638600-98676000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr7:98638800-98655200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr7:98639400-98656600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr7:98639800-98656600	Strong transcription	Liver	Liver
41	chr7:98639800-98658400	Strong transcription	Fetal Intestine Small	intestine
42	chr7:98639800-98658800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr7:98640000-98656600	Strong transcription	Fetal Intestine Large	intestine
44	chr7:98640000-98658400	Strong transcription	Duodenum Mucosa	Duodenum
45	chr7:98640600-98655200	Strong transcription	Cortex derived primary cultured neurospheres	brain
46	chr7:98640800-98655200	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr7:98640800-98655200	Strong transcription	Rectal Mucosa Donor 31	rectum
48	chr7:98640800-98655200	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr7:98640800-98655200	Strong transcription	Stomach Smooth Muscle	stomach
50	chr7:98640800-98656400	Strong transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links