Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:98457783..98459396-chr7:98475490..98477783,2	K562	blood:

Variant related genes	Relation type
ENSG00000196367	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10215494	0.86[AMR][1000 genomes]
rs10230563	0.86[AMR][1000 genomes]
rs10242106	0.86[AMR][1000 genomes]
rs10260884	0.90[AMR][1000 genomes]
rs10267068	1.00[EUR][1000 genomes]
rs10275844	1.00[EUR][1000 genomes]
rs17161567	1.00[EUR][1000 genomes]
rs2138087	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs28502461	1.00[EUR][1000 genomes]
rs28525333	1.00[EUR][1000 genomes]
rs28556608	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58666420	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60932686	0.86[AMR][1000 genomes]
rs61239201	0.86[AMR][1000 genomes]
rs6945370	0.82[AMR][1000 genomes]
rs6956697	0.86[AMR][1000 genomes]
rs6959321	0.82[AMR][1000 genomes]
rs6960312	0.86[AMR][1000 genomes]
rs6963517	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73404949	1.00[EUR][1000 genomes]
rs73407182	1.00[EUR][1000 genomes]
rs73409107	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98448600-98465000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:98449000-98459800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:98449200-98464200	Weak transcription	Fetal Brain Male	brain
4	chr7:98449200-98465000	Weak transcription	Right Atrium	heart
5	chr7:98450800-98464800	Weak transcription	Brain Anterior Caudate	brain
6	chr7:98450800-98465400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr7:98451000-98464600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr7:98453000-98462600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:98453400-98458600	Weak transcription	Brain Germinal Matrix	brain
10	chr7:98454200-98464000	Weak transcription	Fetal Brain Female	brain
11	chr7:98457200-98466200	Weak transcription	Brain Angular Gyrus	brain
12	chr7:98457600-98458800	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr7:98457600-98459000	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr7:98457800-98458200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr7:98457800-98458200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr7:98457800-98458400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain

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