Variant report

Variant	rs10275844
Chromosome Location	chr7:98621315-98621316
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:98621269..98624235-chr7:98626511..98629178,3	MCF-7	breast:
2	chr7:98618071..98621437-chr7:98626035..98628307,3	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10231389	1.00[MEX][hapmap]
rs10235956	0.94[ASW][hapmap];0.87[LWK][hapmap];0.84[MKK][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs10267068	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10279813	0.86[AMR][1000 genomes]
rs10280276	1.00[MEX][hapmap]
rs11768515	0.86[AMR][1000 genomes]
rs11977121	1.00[EUR][1000 genomes]
rs160388	0.86[AMR][1000 genomes]
rs160391	0.86[AMR][1000 genomes]
rs1709724	0.81[AMR][1000 genomes]
rs1709725	0.81[AMR][1000 genomes]
rs1709727	0.81[AMR][1000 genomes]
rs17161567	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2138087	0.94[ASW][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs219794	0.93[AMR][1000 genomes]
rs219801	1.00[MEX][hapmap];0.86[AMR][1000 genomes]
rs219809	0.93[AMR][1000 genomes]
rs28502461	1.00[EUR][1000 genomes]
rs28525333	1.00[EUR][1000 genomes]
rs28556608	1.00[EUR][1000 genomes]
rs310742	0.81[AMR][1000 genomes]
rs310744	0.81[AMR][1000 genomes]
rs4413705	0.93[AMR][1000 genomes]
rs58666420	1.00[EUR][1000 genomes]
rs6949335	1.00[EUR][1000 genomes]
rs6963517	1.00[EUR][1000 genomes]
rs6979768	1.00[MEX][hapmap]
rs73395129	0.86[AMR][1000 genomes]
rs73404949	1.00[EUR][1000 genomes]
rs73407182	1.00[EUR][1000 genomes]
rs7788342	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv1847495	chr7:98556216-98648069	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv1034506	chr7:98556216-98678440	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98583800-98648800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:98604200-98627000	Weak transcription	Fetal Heart	heart
3	chr7:98604800-98627000	Weak transcription	Fetal Brain Male	brain
4	chr7:98607200-98629200	Weak transcription	Psoas Muscle	Psoas
5	chr7:98610200-98625400	Weak transcription	Small Intestine	intestine
6	chr7:98612000-98627800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr7:98612400-98627800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:98612400-98632000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr7:98612600-98625200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr7:98612600-98627000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:98612800-98626400	Weak transcription	Brain Angular Gyrus	brain
12	chr7:98613400-98625400	Weak transcription	Esophagus	oesophagus
13	chr7:98613400-98626000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr7:98613400-98629400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr7:98613600-98624800	Weak transcription	HUVEC	blood vessel
16	chr7:98613600-98625400	Weak transcription	HepG2	liver
17	chr7:98613600-98625600	Weak transcription	Right Ventricle	heart
18	chr7:98613600-98626600	Weak transcription	Fetal Kidney	kidney
19	chr7:98614200-98625000	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr7:98614200-98625400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr7:98614200-98625800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr7:98614600-98625600	Weak transcription	GM12878-XiMat	blood
23	chr7:98617800-98625400	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr7:98618000-98625400	Weak transcription	Brain Germinal Matrix	brain
25	chr7:98618200-98621400	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr7:98618200-98623400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr7:98618200-98624800	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr7:98618200-98624800	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr7:98618200-98624800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr7:98618200-98624800	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr7:98618200-98625000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr7:98618200-98625000	Weak transcription	Fetal Lung	lung
33	chr7:98618200-98625000	Weak transcription	Fetal Muscle Leg	muscle
34	chr7:98618200-98625200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr7:98618200-98625200	Weak transcription	Fetal Stomach	stomach
36	chr7:98618200-98625400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr7:98618200-98625400	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr7:98618200-98625400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr7:98618200-98625400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr7:98618200-98625400	Weak transcription	Fetal Intestine Small	intestine
41	chr7:98618200-98625600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr7:98618200-98625600	Weak transcription	Ovary	ovary
43	chr7:98618200-98625600	Weak transcription	Rectal Smooth Muscle	rectum
44	chr7:98618200-98625800	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr7:98618200-98626000	Weak transcription	HMEC	breast
46	chr7:98618200-98626400	Weak transcription	Hela-S3	cervix
47	chr7:98618200-98626600	Weak transcription	K562	blood
48	chr7:98618200-98626800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr7:98618400-98624600	Weak transcription	Fetal Intestine Large	intestine
50	chr7:98618400-98624800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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