Variant report

Variant	rs60914761
Chromosome Location	chr7:98466104-98466105
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr7:98466073-98466478	HL-60	blood:	n/a	chr7:98466228-98466241 chr7:98466228-98466241

No.	Distal block	Cell Line	Cell type
1	chr7:98464788..98468535-chr7:98474247..98476816,4	MCF-7	breast:
2	chr7:98464934..98467404-chr7:98467908..98470292,2	K562	blood:
3	chr7:98460690..98463022-chr7:98464824..98466673,2	MCF-7	breast:

Variant related genes	Relation type
TMEM130	TF binding region
ENSG00000166448	Chromatin interaction
ENSG00000196367	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10215494	0.87[EUR][1000 genomes]
rs10230563	0.87[EUR][1000 genomes]
rs10242106	0.87[EUR][1000 genomes]
rs11768515	0.87[EUR][1000 genomes]
rs11769458	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs122152	0.87[EUR][1000 genomes]
rs160385	0.87[EUR][1000 genomes]
rs160386	0.87[EUR][1000 genomes]
rs160387	0.87[EUR][1000 genomes]
rs160388	0.87[EUR][1000 genomes]
rs160390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs160391	0.87[EUR][1000 genomes]
rs1709724	1.00[EUR][1000 genomes]
rs1709725	0.87[EUR][1000 genomes]
rs1709727	0.87[EUR][1000 genomes]
rs17161491	0.87[EUR][1000 genomes]
rs219794	0.87[EUR][1000 genomes]
rs219796	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs219801	0.87[EUR][1000 genomes]
rs219802	0.87[EUR][1000 genomes]
rs219803	0.87[EUR][1000 genomes]
rs219804	0.87[EUR][1000 genomes]
rs219809	0.87[EUR][1000 genomes]
rs219810	0.87[EUR][1000 genomes]
rs219811	0.87[EUR][1000 genomes]
rs219812	0.87[EUR][1000 genomes]
rs219818	0.87[EUR][1000 genomes]
rs219830	0.87[EUR][1000 genomes]
rs219835	0.87[EUR][1000 genomes]
rs219836	0.87[EUR][1000 genomes]
rs219837	0.87[EUR][1000 genomes]
rs219840	0.87[EUR][1000 genomes]
rs310736	0.87[EUR][1000 genomes]
rs310738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs310739	0.87[EUR][1000 genomes]
rs310741	0.87[EUR][1000 genomes]
rs310742	0.87[EUR][1000 genomes]
rs310744	0.87[EUR][1000 genomes]
rs4413705	0.87[EUR][1000 genomes]
rs60932686	0.87[EUR][1000 genomes]
rs61239201	0.87[EUR][1000 genomes]
rs6945370	0.87[EUR][1000 genomes]
rs6956697	0.87[EUR][1000 genomes]
rs6959321	0.87[EUR][1000 genomes]
rs6960312	0.87[EUR][1000 genomes]
rs6967096	0.87[EUR][1000 genomes]
rs73393198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73393201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73395129	0.87[EUR][1000 genomes]
rs73407188	0.87[EUR][1000 genomes]
rs73409107	0.87[EUR][1000 genomes]
rs73409108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7807059	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98457200-98466200	Weak transcription	Brain Angular Gyrus	brain
2	chr7:98463600-98466800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr7:98464200-98466800	Enhancers	Fetal Brain Male	brain
4	chr7:98464400-98466400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
5	chr7:98464600-98466400	Enhancers	Fetal Brain Female	brain
6	chr7:98465200-98466200	Weak transcription	Brain Anterior Caudate	brain
7	chr7:98465200-98466400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr7:98465400-98466800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:98465400-98467200	Weak transcription	Right Atrium	heart
10	chr7:98465600-98466600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr7:98465600-98466800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:98466000-98466200	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr7:98466000-98467000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
14	chr7:98466000-98467200	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
15	chr7:98466000-98467600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood

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