Variant report

Variant	rs10269560
Chromosome Location	chr7:98418898-98418899
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:98413093..98415356-chr7:98417675..98420258,2	K562	blood:
2	chr7:98398961..98401388-chr7:98418660..98420280,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10269142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10281327	1.00[EUR][1000 genomes]
rs58045641	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58300070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7804376	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98409200-98420000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr7:98409200-98420000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:98414000-98423800	Weak transcription	Fetal Brain Female	brain
4	chr7:98414400-98424000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:98414600-98420000	Weak transcription	Fetal Muscle Leg	muscle
6	chr7:98415200-98420000	Weak transcription	Aorta	Aorta
7	chr7:98415200-98420200	Weak transcription	Esophagus	oesophagus
8	chr7:98415200-98423800	Weak transcription	Right Atrium	heart
9	chr7:98415200-98423800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr7:98415400-98420000	Weak transcription	Fetal Heart	heart
11	chr7:98415600-98423000	Weak transcription	Left Ventricle	heart
12	chr7:98416400-98423800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr7:98417600-98420000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr7:98417600-98420000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr7:98417600-98423800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr7:98417600-98423800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr7:98417600-98423800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:98417800-98420000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr7:98417800-98423800	Weak transcription	Right Ventricle	heart
20	chr7:98417800-98424000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr7:98418400-98420000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr7:98418800-98419000	Enhancers	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links