Variant report

Variant	rs58300070
Chromosome Location	chr7:98408239-98408240
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10269142	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10269560	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10281327	1.00[EUR][1000 genomes]
rs58045641	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7804376	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98400400-98408800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:98405000-98408600	Enhancers	Fetal Brain Female	brain
3	chr7:98405200-98408800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:98405200-98408800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr7:98405400-98408800	Enhancers	Fetal Brain Male	brain
6	chr7:98406400-98413800	Weak transcription	Right Atrium	heart
7	chr7:98406600-98408600	Enhancers	Fetal Muscle Trunk	muscle
8	chr7:98406600-98409200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:98406800-98408600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:98406800-98408600	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr7:98407400-98408600	Enhancers	Fetal Muscle Leg	muscle
12	chr7:98407600-98408800	ZNF genes & repeats	Fetal Stomach	stomach
13	chr7:98407800-98408800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:98407800-98408800	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr7:98408000-98408600	Enhancers	Brain Germinal Matrix	brain
16	chr7:98408200-98408800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr7:98408200-98408800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links