Variant report

Variant	rs10269701
Chromosome Location	chr7:127166578-127166579
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10265603	0.83[ASN][1000 genomes]
rs10281056	0.83[ASN][1000 genomes]
rs10487490	0.87[YRI][hapmap]
rs10954161	0.83[ASN][1000 genomes]
rs11761988	0.83[ASN][1000 genomes]
rs11764631	0.85[ASN][1000 genomes]
rs11767380	0.83[ASN][1000 genomes]
rs1419430	0.83[ASN][1000 genomes]
rs1557643	0.83[ASN][1000 genomes]
rs17715255	0.83[ASN][1000 genomes]
rs17715285	0.83[ASN][1000 genomes]
rs35195581	0.83[ASN][1000 genomes]
rs4551267	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4728072	0.83[ASN][1000 genomes]
rs4728073	0.83[ASN][1000 genomes]
rs4728075	0.81[ASN][1000 genomes]
rs4731370	0.83[ASN][1000 genomes]
rs55657491	0.83[ASN][1000 genomes]
rs57867532	0.85[ASN][1000 genomes]
rs58894662	0.83[ASN][1000 genomes]
rs59647030	0.80[ASN][1000 genomes]
rs62481345	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6949899	0.80[CHB][hapmap]
rs6967546	0.81[CHB][hapmap]
rs6970053	0.83[ASN][1000 genomes]
rs6976685	0.83[ASN][1000 genomes]
rs990032	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831122	chr7:127143207-127357885	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127165800-127166600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
2	chr7:127166200-127167000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:127166200-127167000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:127166400-127167600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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