Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:127165172..127166932-chr7:127169231..127170930,2	K562	blood:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10265603	0.83[ASN][1000 genomes]
rs10269701	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10281056	0.83[ASN][1000 genomes]
rs10954161	0.83[ASN][1000 genomes]
rs11761988	0.83[ASN][1000 genomes]
rs11764631	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11767380	0.83[ASN][1000 genomes]
rs1419430	0.83[ASN][1000 genomes]
rs1557643	0.83[ASN][1000 genomes]
rs17715255	0.83[ASN][1000 genomes]
rs17715285	0.83[ASN][1000 genomes]
rs35195581	0.83[ASN][1000 genomes]
rs4551267	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4728072	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4728073	0.83[ASN][1000 genomes]
rs4728075	0.81[ASN][1000 genomes]
rs4731370	0.83[ASN][1000 genomes]
rs55657491	0.83[ASN][1000 genomes]
rs57867532	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58894662	0.83[ASN][1000 genomes]
rs59647030	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6970053	0.83[ASN][1000 genomes]
rs6976685	0.83[ASN][1000 genomes]
rs990032	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831122	chr7:127143207-127357885	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127165400-127166400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search: