Variant report

Variant	rs10270024
Chromosome Location	chr7:147262590-147262591
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10223936	0.93[ASN][1000 genomes]
rs10223972	0.93[ASN][1000 genomes]
rs10250939	0.93[ASN][1000 genomes]
rs10266173	0.93[ASN][1000 genomes]
rs10269376	0.93[ASN][1000 genomes]
rs10269610	0.93[ASN][1000 genomes]
rs10270032	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10272825	0.93[ASN][1000 genomes]
rs10273288	0.86[ASN][1000 genomes]
rs10273613	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10279399	0.93[ASN][1000 genomes]
rs10952695	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11768141	0.93[ASN][1000 genomes]
rs13232091	0.91[ASN][1000 genomes]
rs1859549	0.93[ASN][1000 genomes]
rs2190000	0.93[ASN][1000 genomes]
rs2190001	0.93[ASN][1000 genomes]
rs2190002	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2190003	0.93[ASN][1000 genomes]
rs2190004	0.93[ASN][1000 genomes]
rs2190005	0.93[ASN][1000 genomes]
rs2190006	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2190007	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6464824	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6962824	0.93[ASN][1000 genomes]
rs6962950	0.93[ASN][1000 genomes]
rs6966095	0.93[ASN][1000 genomes]
rs6978578	0.91[ASN][1000 genomes]
rs6980002	0.93[ASN][1000 genomes]
rs6980460	0.93[ASN][1000 genomes]
rs851828	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs929353	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147261600-147262800	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr7:147261800-147262600	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr7:147262200-147269000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links